Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014873.1 Corchorus olitorius cultivar O-4 contig14906, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58019

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
261--291
10
3.1
10
100
0
62
38
0
29
32
1.57
7056--7258
95
2.1
96
86
5
288
35
7
5
51
1.53
7173--7238
27
2.4
27
90
7
98
42
4
3
50
1.38
8382--9265
333
2.7
333
82
6
1133
33
14
16
35
1.89
13458--13619
60
2.7
60
84
5
211
35
14
19
30
1.92
13518--13626
31
3.6
31
64
14
82
35
16
20
27
1.94
13663--13824
60
2.7
60
79
3
191
30
16
16
36
1.91
17328--17947
315
2.0
315
94
0
1087
32
20
19
27
1.97
39608--39996
198
2.0
198
89
3
595
27
22
13
35
1.92
41831--41859
12
2.4
12
100
0
58
17
0
24
58
1.38
44454--44607
80
1.9
80
95
0
281
51
16
11
20
1.74
45436--45611
61
2.9
61
84
3
203
26
5
20
48
1.70
46225--46295
21
3.4
21
88
0
115
38
1
43
16
1.57
46225--46309
42
2.0
42
97
0
161
38
3
42
15
1.64
46238--46309
21
3.4
21
86
0
108
38
4
41
15
1.66
49280--49314
18
1.9
18
94
0
61
20
14
20
45
1.85
55945--55985
20
2.0
21
86
13
59
9
12
0
78
0.98

Tables:   1

The End!