Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014875.1 Corchorus olitorius cultivar O-4 contig14908, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1232
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:674 original size:20 final size:20

Alignment explanation


    Indices: 625--677  Score: 72
    Period size: 20  Copynumber: 2.6  Consensus size: 20

        615 TTTCCTTTAG

                      *         
        625 TTTTGTTTTTATTTTTCGTA
          1 TTTTGTTTTTGTTTTTCGTA

                               *
        645 TTTTGTTTTTGTTTTT-GTT
          1 TTTTGTTTTTGTTTTTCGTA

                          
        664 TTTGTGTTTTTGTT
          1 TTT-TGTTTTTGTT

        678 AATTTTGCAG


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  19    5  0.17
  20   25  0.83

ACGTcount: A:0.04, C:0.02, G:0.15, T:0.79


Consensus pattern (20 bp):   
TTTTGTTTTTGTTTTTCGTA

Found at i:677 original size:6 final size:6

Alignment explanation


    Indices: 625--673  Score: 62
    Period size: 6  Copynumber: 7.7  Consensus size: 6

        615 TTTCCTTTAG

                       *                                            
        625 TTTTGT TTTTAT TTTTCGT ATTTTGT TTTTGT TTTTGT TTTTGT GTTTT
          1 TTTTGT TTTTGT TTTT-GT -TTTTGT TTTTGT TTTTGT TTTTGT -TTTT

        674 TGTTAATTTT


Statistics
Matches: 38,  Mismatches: 2, Indels: 5
        0.84            0.04        0.11

Matches are distributed among these distances:
   6   27  0.71
   7    7  0.18
   8    4  0.11

ACGTcount: A:0.04, C:0.02, G:0.14, T:0.80


Consensus pattern (6 bp):   
TTTTGT
Done.