Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014879.1 Corchorus olitorius cultivar O-4 contig14912, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46209

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--141
70
1.9
70
98
0
261
44
8
9
37
1.69
525--582
26
2.2
27
96
3
109
46
5
10
37
1.60
536--588
26
2.0
26
82
7
63
49
5
9
35
1.59
1048--1150
21
4.7
21
71
20
68
33
5
4
56
1.45
2239--2323
21
4.0
21
73
11
66
40
10
9
40
1.72
2750--2779
2
15.0
2
100
0
60
50
0
0
50
1.00
2974--3067
46
2.0
46
97
0
179
31
20
9
38
1.85
4328--4360
17
1.9
17
88
11
50
78
3
0
18
0.87
4325--4367
5
8.2
5
80
19
52
76
2
0
20
0.89
20281--20315
15
2.4
15
90
4
54
28
20
8
42
1.81
31696--31746
16
3.2
16
71
15
52
39
23
13
23
1.91
31687--31780
31
3.0
31
75
7
82
36
28
13
21
1.92
31932--31971
22
1.9
22
85
10
57
10
22
5
62
1.46
33422--33473
27
2.0
26
81
11
61
44
1
1
51
1.23
33949--34033
25
3.4
25
67
23
79
14
5
23
56
1.60
33952--34076
50
2.5
50
93
2
207
16
6
24
52
1.67
34629--34851
76
2.9
76
89
2
331
32
18
19
29
1.96
38846--38885
2
20.0
2
94
0
71
50
2
0
47
1.14
40182--40219
11
3.5
11
89
10
51
39
0
2
57
1.12
40367--40396
12
2.5
12
94
0
51
40
0
20
40
1.52
41871--41977
45
2.4
45
77
0
115
42
14
28
14
1.84
45621--45817
66
3.0
66
84
0
252
39
14
11
34
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45635--45889
22
11.6
22
76
5
203
39
16
11
32
1.84

Tables:   1

The End!