Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014881.1 Corchorus olitorius cultivar O-4 contig14914, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47032
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Found at i:369 original size:24 final size:25
Alignment explanation
Indices: 323--368 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
313 AACCTCCCAA
*
323 ACCCTAGACTTCATTAGCCTTTTAT
1 ACCCTAGACTTCATTACCCTTTTAT
348 ACCCTAGAC-TCATT-CCCTTTT
1 ACCCTAGACTTCATTACCCTTTT
369 TTGTTTGGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 5 0.25
25 9 0.45
ACGTcount: A:0.22, C:0.33, G:0.07, T:0.39
Consensus pattern (25 bp):
ACCCTAGACTTCATTACCCTTTTAT
Found at i:832 original size:35 final size:35
Alignment explanation
Indices: 793--975 Score: 246
Period size: 35 Copynumber: 5.3 Consensus size: 35
783 GGATCATCTG
* * **
793 GAGATCAACTTTGATCTTCGAAAACTTCTAAAAAT
1 GAGATCAACTCTGATCATCGAAAACTTCTTGAAAT
*
828 GAGATCAACTCTGATCATCGAAAACTTTTTGAAAT
1 GAGATCAACTCTGATCATCGAAAACTTCTTGAAAT
*
863 GAGATCAACTCTGATCAT-GAAAATCTTCTTAAAAT
1 GAGATCAACTCTGATCATCGAAAA-CTTCTTGAAAT
* *
898 GAAATCAACTCTGATCAT--AAAACTTCTTGAAAC
1 GAGATCAACTCTGATCATCGAAAACTTCTTGAAAT
* *
931 GAGATCAACTCTAATCATCGAAAACTTCTTGGAAT
1 GAGATCAACTCTGATCATCGAAAACTTCTTGAAAT
966 GAGATCAACT
1 GAGATCAACT
976 TTGGTTGAAA
Statistics
Matches: 131, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
33 25 0.19
34 9 0.07
35 97 0.74
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.30
Consensus pattern (35 bp):
GAGATCAACTCTGATCATCGAAAACTTCTTGAAAT
Found at i:989 original size:56 final size:56
Alignment explanation
Indices: 924--1031 Score: 189
Period size: 56 Copynumber: 1.9 Consensus size: 56
914 ATAAAACTTC
* *
924 TTGAAACGAGATCAACTCTAATCATCGAAAACTTCTTGGAATGAGATCAACTTTGG
1 TTGAAACGAGATCAACTCTAATCATCGAAAACTTCTTGAAAGGAGATCAACTTTGG
*
980 TTGAAACGAGATCAACTCTAATGATCGAAAACTTCTTGAAAGGAGATCAACT
1 TTGAAACGAGATCAACTCTAATCATCGAAAACTTCTTGAAAGGAGATCAACT
1032 CTGATCAACG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (56 bp):
TTGAAACGAGATCAACTCTAATCATCGAAAACTTCTTGAAAGGAGATCAACTTTGG
Found at i:1019 original size:35 final size:35
Alignment explanation
Indices: 980--1104 Score: 169
Period size: 35 Copynumber: 3.6 Consensus size: 35
970 TCAACTTTGG
* *
980 TTGAAACGAGATCAACTCTAATGATCGAAAACTTC
1 TTGAAACGAGATCAACTCTGATCATCGAAAACTTC
* *
1015 TTGAAAGGAGATCAACTCTGATCAACGAAAACTTC
1 TTGAAACGAGATCAACTCTGATCATCGAAAACTTC
* *
1050 TTAAAACGAGATCAACTCTGATCATTGAAAACTTC
1 TTGAAACGAGATCAACTCTGATCATCGAAAACTTC
* * *
1085 TTGGAATGGGATCAACTCTG
1 TTGAAACGAGATCAACTCTG
1105 CTTGAAATGA
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 78 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (35 bp):
TTGAAACGAGATCAACTCTGATCATCGAAAACTTC
Found at i:1082 original size:126 final size:126
Alignment explanation
Indices: 856--1230 Score: 567
Period size: 126 Copynumber: 3.0 Consensus size: 126
846 CGAAAACTTT
* * * *
856 TTGAAATGAGATCAACTCTGATCAT-GAAAATCTTCTTAAAATGAAATCAACTCTGATC-A-TAA
1 TTGAAATGAGATCAACTCTGATCATCGAAAA-CTTCTTGAAAGGAGATCAACTCTGATCAACGAA
* *
918 AACTTCTTGAAACGAGATCAACTCTAATCATCGAAAACTTCTTGGAATGAGATCAACTTTGG
65 AACTTCTTGAAACGAGATCAACTCTGATCATCGAAAACTTCTTGGAATGAGATCAACTTTGC
* * *
980 TTGAAACGAGATCAACTCTAATGATCGAAAACTTCTTGAAAGGAGATCAACTCTGATCAACGAAA
1 TTGAAATGAGATCAACTCTGATCATCGAAAACTTCTTGAAAGGAGATCAACTCTGATCAACGAAA
* * * *
1045 ACTTCTTAAAACGAGATCAACTCTGATCATTGAAAACTTCTTGGAATGGGATCAACTCTGC
66 ACTTCTTGAAACGAGATCAACTCTGATCATCGAAAACTTCTTGGAATGAGATCAACTTTGC
* *
1106 TTGAAATGAGATCAACTCTGATCATCAAAAACTTCTTGAAAGGAGATAAACTCTGATCAACGAAA
1 TTGAAATGAGATCAACTCTGATCATCGAAAACTTCTTGAAAGGAGATCAACTCTGATCAACGAAA
* *
1171 ACTTCTTGAAACGAGATCAACTCTGATCATCGAAAACTTCTTGAAACGAGATCAACTTTG
66 ACTTCTTGAAACGAGATCAACTCTGATCATCGAAAACTTCTTGGAATGAGATCAACTTTG
1231 ATCATCGAAA
Statistics
Matches: 224, Mismatches: 24, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
124 46 0.21
125 6 0.03
126 172 0.77
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (126 bp):
TTGAAATGAGATCAACTCTGATCATCGAAAACTTCTTGAAAGGAGATCAACTCTGATCAACGAAA
ACTTCTTGAAACGAGATCAACTCTGATCATCGAAAACTTCTTGGAATGAGATCAACTTTGC
Found at i:1108 original size:21 final size:21
Alignment explanation
Indices: 1084--1125 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1074 TTGAAAACTT
* *
1084 CTTGGAATGGGATCAACTCTG
1 CTTGAAATGAGATCAACTCTG
1105 CTTGAAATGAGATCAACTCTG
1 CTTGAAATGAGATCAACTCTG
1126 ATCATCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (21 bp):
CTTGAAATGAGATCAACTCTG
Found at i:1109 original size:91 final size:91
Alignment explanation
Indices: 1014--1295 Score: 267
Period size: 105 Copynumber: 2.9 Consensus size: 91
1004 TCGAAAACTT
* * **
1014 CTTGAAAGGAGATCAACTCTGATCAACGAAAACTTCTTAAAACGAGATCAACTCTGATCATTGAA
1 CTTGAAAGGAGATCAACTCTGATCAACAAAAACTTCTTAAAACGAGATAAACTCTGATCAACGAA
* * *
1079 AACTTCTTGGAATGGGATCAACTCTG
66 AACTTCTTGAAACGAGATCAACTCTG
* * * *
1105 CTTGAAATGAGATCAACTCTGATCATCAAAAACTTCTTGAAAGGAGATAAACTCTGATCAACGAA
1 CTTGAAAGGAGATCAACTCTGATCAACAAAAACTTCTTAAAACGAGATAAACTCTGATCAACGAA
1170 AACTTCTTGAAACGAGATCAACTCTGATCATCG
66 AACTTCTTGAAACGAGATCAA--C---TC-T-G
* * * * * *
1203 AAAACTTCTTGAAACGAGATCAACTTTGATCATCGAAAACTTCTTGAAACGAGATCAACTCTGAT
1 -------CTTGAAAGGAGATCAACTCTGATCAACAAAAACTTCTTAAAACGAGATAAACTCTGAT
* *
1268 CATCGAAAACTTCTTGAAAGGAGATCAA
59 CAACGAAAACTTCTTGAAACGAGATCAA
1296 ATTTGATCAC
Statistics
Matches: 159, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
91 75 0.47
93 1 0.01
96 2 0.01
97 1 0.01
98 1 0.01
105 79 0.50
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (91 bp):
CTTGAAAGGAGATCAACTCTGATCAACAAAAACTTCTTAAAACGAGATAAACTCTGATCAACGAA
AACTTCTTGAAACGAGATCAACTCTG
Found at i:1144 original size:35 final size:35
Alignment explanation
Indices: 1105--1314 Score: 323
Period size: 35 Copynumber: 6.0 Consensus size: 35
1095 ATCAACTCTG
* *
1105 CTTGAAATGAGATCAACTCTGATCATCAAAAACTT
1 CTTGAAACGAGATCAACTCTGATCATCGAAAACTT
* * *
1140 CTTGAAAGGAGATAAACTCTGATCAACGAAAACTT
1 CTTGAAACGAGATCAACTCTGATCATCGAAAACTT
1175 CTTGAAACGAGATCAACTCTGATCATCGAAAACTT
1 CTTGAAACGAGATCAACTCTGATCATCGAAAACTT
*
1210 CTTGAAACGAGATCAACTTTGATCATCGAAAACTT
1 CTTGAAACGAGATCAACTCTGATCATCGAAAACTT
1245 CTTGAAACGAGATCAACTCTGATCATCGAAAACTT
1 CTTGAAACGAGATCAACTCTGATCATCGAAAACTT
* * *
1280 CTTGAAAGGAGATCAAATTTGATCA-CTGAAAACTT
1 CTTGAAACGAGATCAACTCTGATCATC-GAAAACTT
1315 TTTGGAATGA
Statistics
Matches: 162, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
34 1 0.01
35 161 0.99
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.27
Consensus pattern (35 bp):
CTTGAAACGAGATCAACTCTGATCATCGAAAACTT
Found at i:1420 original size:54 final size:54
Alignment explanation
Indices: 1289--1853 Score: 438
Period size: 54 Copynumber: 10.5 Consensus size: 54
1279 TCTTGAAAGG
* * * * * *
1289 AGATCAAATTTGATCACTGAAAACTT-TTTGGAATGACCACACTGGATCATCTG-
1 AGATCAACTTAGATCACTGAAAACTTCTAT-GAAAGACCGCACTGGGTCATCTGA
* * * * *
1342 GGATCAACTCT-GATTACTTAAAACTTCT-TGAAACGACCGCACTGGATCATCTGG
1 AGATCAACT-TAGATCACTGAAAACTTCTATGAAA-GACCGCACTGGGTCATCTGA
* ** * * * *
1396 GGATCAACTCT-GATCACTGAAAACTTCT-TGAAATGATTGCACTAGATCATTTGG
1 AGATCAACT-TAGATCACTGAAAACTTCTATGAAA-GACCGCACTGGGTCATCTGA
* * ** * *
1450 GGATCAACTCT-GATCA-TACAAAACTTCT-TGGACTGATCGCACTGGATCATCT-A
1 AGATCAACT-TAGATCACT-GAAAACTTCTAT-GAAAGACCGCACTGGGTCATCTGA
* ** * ** *
1503 GGGATCAACTCT-GATTTCT-AAGAACTTCTACGAAAGACAACACCGGGTCATCTGA
1 -AGATCAACT-TAGATCACTGAA-AACTTCTATGAAAGACCGCACTGGGTCATCTGA
* * * * *
1558 AGATCAACTTAGATCTCTGAAAGCTTCTATGGAAGACCGCACAGGGTCATCTTA
1 AGATCAACTTAGATCACTGAAAACTTCTATGAAAGACCGCACTGGGTCATCTGA
* * *
1612 AAATCAACTTAGAT-ATCTGAAATCTTCTATGAAAGGCCGCACAT-GGTCATCTGA
1 AGATCAACTTAGATCA-CTGAAAACTTCTATGAAAGACCGCAC-TGGGTCATCTGA
* * *
1666 AGATCAACTTAAATCTCTGAAAACTTCTATAAAAGACCGCACTGGGTCATCTGA
1 AGATCAACTTAGATCACTGAAAACTTCTATGAAAGACCGCACTGGGTCATCTGA
* * * *
1720 AGATCAACTTAAAACTCTGAAAACTTCTATGAAAGACCGCACAGGGTCATCTGA
1 AGATCAACTTAGATCACTGAAAACTTCTATGAAAGACCGCACTGGGTCATCTGA
* * * *
1774 AGATCAACTTAAACCTCTGAAAACTTCTATGAAAGACCGCACAGGGTCATCTGA
1 AGATCAACTTAGATCACTGAAAACTTCTATGAAAGACCGCACTGGGTCATCTGA
* * *
1828 AGATCAACTTAAACCTCTGAAAACTT
1 AGATCAACTTAGATCACTGAAAACTT
1854 TGAAAGATCG
Statistics
Matches: 439, Mismatches: 56, Indels: 33
0.83 0.11 0.06
Matches are distributed among these distances:
52 3 0.01
53 44 0.10
54 386 0.88
55 6 0.01
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (54 bp):
AGATCAACTTAGATCACTGAAAACTTCTATGAAAGACCGCACTGGGTCATCTGA
Found at i:9459 original size:65 final size:62
Alignment explanation
Indices: 9360--9484 Score: 169
Period size: 65 Copynumber: 2.0 Consensus size: 62
9350 TTGAAAAAAG
* *
9360 AAAGGAAAAAAAACCCAAGTGCCTAAGCCTAAATGAATTAAGATTTTGGGAATGGGCTTTTA
1 AAAGGAAAAAAAACCCAAGTGCCTAAGCCCAAATGAATTAAGACTTTGGGAATGGGCTTTTA
* * * *
9422 AAAGGAAAAAAGAAATCCCTAGTGCCTACGCCCAAATGAGTTAAGACTTTGGGAGTGGGCTTT
1 AAAGG-AAAAA-AAA-CCCAAGTGCCTAAGCCCAAATGAATTAAGACTTTGGGAATGGGCTTT
9485 AAGAGAAACA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
62 5 0.09
63 5 0.09
64 3 0.06
65 41 0.76
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (62 bp):
AAAGGAAAAAAAACCCAAGTGCCTAAGCCCAAATGAATTAAGACTTTGGGAATGGGCTTTTA
Found at i:10350 original size:2 final size:2
Alignment explanation
Indices: 10345--10383 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
10335 AAGGAATTTA
10345 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10384 CTACCAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:21730 original size:20 final size:22
Alignment explanation
Indices: 21705--21750 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
21695 ACTACCTCTT
*
21705 TTTTTTATTACC-GAATTTCA-
1 TTTTTTATTACCAAAATTTCAG
21725 TTTTTTATTACCAAAATTTCAG
1 TTTTTTATTACCAAAATTTCAG
21747 TTTT
1 TTTT
21751 ACCTCTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.52
21 7 0.30
22 4 0.17
ACGTcount: A:0.26, C:0.13, G:0.04, T:0.57
Consensus pattern (22 bp):
TTTTTTATTACCAAAATTTCAG
Found at i:21998 original size:52 final size:52
Alignment explanation
Indices: 21925--22951 Score: 509
Period size: 51 Copynumber: 19.2 Consensus size: 52
21915 TCATTACTAA
* *
21925 ATTTTACTCTTTTAATTACCAAATTTTC-TCTTACTCTTTAATTGCGCAATTTC
1 ATTTTACTC-TTTAATTACCAAATTTTCATTTTACTCTTTAATTAC-CAATTTC
* *
21978 ATTTTACTCTTTAATTACCAAA-TTCCCTTTTACTCTTTAATTTACC-A----
1 ATTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAA-TTACCAATTTC
* * * *
22025 A--TTACTCTTTAATTACCCAA--TTCATCTTATTCTCTAATTACCCAAATTTACC
1 ATTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAATTA-CC-AATTT--C
* * * * *
22077 A-ATTACACTTTAATTAACC-AA-TTTCATTTTACTTTTTTGATTACCAAATTAACC
1 ATTTTACTCTTTAATT-ACCAAATTTTCATTTTAC-TCTTTAATTACC-AATT--TC
* * * * * *
22131 A-ATTACTCTTTGATTACCCAA-TTTCATCTTATTCTTTAATTACCCAAATATACC
1 ATTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAATTA-CC-AAT-T-TC
* * * *
22185 A-ATTACTCTTTAATTACCCAA-TTTCATTTTACTTTTTTAATTACCAAATTAACC
1 ATTTTACTCTTTAATTACCAAATTTTCATTTTAC-TCTTTAATTACC-AATT--TC
* * * *
22239 A-ATTACTCTTTGATTACCAAA--TTCATTTTACTTTTTAATTACGCAAGTTAACC
1 ATTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAATTAC-CAA-TT--TC
* ** * * * *
22292 A-ATTACTCCGTAATTACTAAA-TTTCCTTTTACTTTTTAATTACCAAATTC
1 ATTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAATTACCAATTTC
* * * * *
22342 ACTTTACTCCTTAATTAACCAAA-TTTCCTTTTACTCTTTAATTACTAAATTC
1 ATTTTACTCTTTAATT-ACCAAATTTTCATTTTACTCTTTAATTACCAATTTC
* * *
22394 ATTTTACTCTTTAATTAACCAAATTTACCAATTTCCTTTTACTCTTTAATT-TCAAATTC
1 ATTTTACTCTTTAATT-ACCAAA--T-----TTTCATTTTACTCTTTAATTACCAATTTC
* *
22453 ATTTTACTCTTTAATTAACCAAATTTACCAATTTCCTTTTACTCTTTAATTACTAGA-TTC
1 ATTTTACTCTTTAATT-ACCAAA--T-----TTTCATTTTACTCTTTAATTACCA-ATTTC
* *
22513 ATTTTACTCTTTAATTTGCC-AA-TTTCCTTTTACTCTTTAATTACCCAA-TTC
1 ATTTTACTCTTTAA-TTACCAAATTTTCATTTTACTCTTTAATTA-CCAATTTC
* * **
22564 ATTTTACTCTTTAATTAACCAAA-TTTCCTTTTACTTTTTAATTTATTAATTTC
1 ATTTTACTCTTTAATT-ACCAAATTTTCATTTTACTCTTTAA-TTACCAATTTC
* *
22617 CTTTTACTCTTTAATTACTAAA--TTCATTTTACTCTTTAATTAACCAAATTTC
1 ATTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAATT-ACC-AATTTC
* * *
22669 CTTTTACTTTTTAATTAACC-AA-TTTCCTTTTACTCTTTAATTAACCAAATTTACC
1 ATTTTACTCTTTAATT-ACCAAATTTTCATTTTACTCTTTAATT-ACC-AATTT--C
*
22724 AATTTTCTTTTACTCTTTAATTACTAAA--TTCATTTTACTCTTTAATTAACCAAATTTACC
1 -A-----TTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAATT-ACC-AATTT--C
* * *
22784 AATTTCCTTTTACTCTTTAATTACTAAA--TTCATTTTACTATTTAATTTGCCAATTTC
1 -A-----TTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAA-TTACCAATTTC
* *
22841 CTTTTACTCTTTAATTACCAAA--TTCATTTTACTCTTTAATTTGCCAATTTC
1 ATTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAA-TTACCAATTTC
* * * *
22892 CTTTTACTCTTTAATTACCAAA--TTAATTTTGCTCTTTAATTTGCCAAATTTC
1 ATTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAA-TTACC-AATTTC
*
22944 CTTTTACT
1 ATTTTACT
22952 TTTTGACTAT
Statistics
Matches: 843, Mismatches: 73, Indels: 117
0.82 0.07 0.11
Matches are distributed among these distances:
43 3 0.00
44 14 0.02
45 18 0.02
46 1 0.00
47 1 0.00
50 6 0.01
51 164 0.19
52 159 0.19
53 126 0.15
54 129 0.15
55 18 0.02
57 1 0.00
59 64 0.08
60 118 0.14
61 21 0.02
ACGTcount: A:0.30, C:0.21, G:0.01, T:0.48
Consensus pattern (52 bp):
ATTTTACTCTTTAATTACCAAATTTTCATTTTACTCTTTAATTACCAATTTC
Found at i:22031 original size:19 final size:19
Alignment explanation
Indices: 22007--22099 Score: 65
Period size: 19 Copynumber: 5.1 Consensus size: 19
21997 AAATTCCCTT
22007 TTACTCTTTAATTTACCAA
1 TTACTCTTTAATTTACCAA
22026 TTACTCTTTAA-TTACCCAA
1 TTACTCTTTAATTTA-CCAA
*
22045 TT-CATC-TT-ATTCT-CTAA
1 TTAC-TCTTTAATT-TACCAA
**
22062 TTAC-C-CAAATTTACCAA
1 TTACTCTTTAATTTACCAA
* *
22079 TTACACTTTAATTAACCAA
1 TTACTCTTTAATTTACCAA
22098 TT
1 TT
22100 TCATTTTACT
Statistics
Matches: 58, Mismatches: 7, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
16 2 0.03
17 16 0.28
18 9 0.16
19 31 0.53
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.43
Consensus pattern (19 bp):
TTACTCTTTAATTTACCAA
Found at i:22132 original size:54 final size:54
Alignment explanation
Indices: 22016--22727 Score: 408
Period size: 54 Copynumber: 13.2 Consensus size: 54
22006 TTTACTCTTT
* * * * *
22016 AATTTACCAATTACTCTTTAATTACCCAA-TTCATCTTA-TTCTCTAATTACCCA
1 AATTAACCAATTACTCTTTAATTAACCAATTTCATTTTACTTTTTTAATTA-CCA
* * *
22069 AATTTACCAATTACACTTTAATTAACCAATTTCATTTTACTTTTTTGATTACCA
1 AATTAACCAATTACTCTTTAATTAACCAATTTCATTTTACTTTTTTAATTACCA
* * * *
22123 AATTAACCAATTACTCTTTGATTACCCAATTTCATCTTA-TTCTTTAATTACCCA
1 AATTAACCAATTACTCTTTAATTAACCAATTTCATTTTACTTTTTTAATTA-CCA
*
22177 AA-TATACCAATTACTCTTTAATTACCCAATTTCATTTTACTTTTTTAATTACCA
1 AATTA-ACCAATTACTCTTTAATTAACCAATTTCATTTTACTTTTTTAATTACCA
* *
22231 AATTAACCAATTACTCTTTGATT-ACCAAATTCATTTTAC-TTTTTAATTACGCA
1 AATTAACCAATTACTCTTTAATTAACCAATTTCATTTTACTTTTTTAATTAC-CA
* ** * *
22284 AGTTAACCAATTACTCCGTAATT-ACTAAATTTCCTTTTAC-TTTTTAATTACCA
1 AATTAACCAATTACTCTTTAATTAAC-CAATTTCATTTTACTTTTTTAATTACCA
* * * * * *
22337 AATTCA-C-TTTACTCCTTAATTAACCAAATTTCCTTTTAC-TCTTTAATTACTA
1 AATTAACCAATTACTCTTTAATTAACC-AATTTCATTTTACTTTTTTAATTACCA
* * * *
22389 AATT---CATTTTACTCTTTAATTAACCAAATTTACCAATTTCCTTTTACTCTTTAATT-TCA
1 AATTAACCA-ATTACTCTTTAATTAACC-AATTT--CATTTTAC--TT--T-TTTAATTACCA
* * * *
22448 AATT---CATTTTACTCTTTAATTAACCAAATTTACCAATTTCCTTTTACTCTTTAATTACTA
1 AATTAACCA-ATTACTCTTTAATTAACC-AATTT--CATTTTAC--TT--T-TTTAATTACCA
* * ** * * *
22508 GATT---CATTTTACTCTTTAATTTGCCAATTTCCTTTTAC-TCTTTAATTACCC
1 AATTAACCA-ATTACTCTTTAATTAACCAATTTCATTTTACTTTTTTAATTACCA
* * **
22559 AATT---CATTTTACTCTTTAATTAACCAAATTTCCTTTTAC-TTTTTAATTTA-TT
1 AATTAACCA-ATTACTCTTTAATTAACC-AATTTCATTTTACTTTTTTAA-TTACCA
* ** * * *
22611 AATT-TCCTTTTACTCTTTAATT-ACTAAATTCATTTTAC-TCTTTAATTAACCA
1 AATTAACCAATTACTCTTTAATTAACCAATTTCATTTTACTTTTTTAATT-ACCA
* ** * * *
22663 AATT-TCCTTTTACTTTTTAATTAACCAATTTCCTTTTAC-TCTTTAATTAACCA
1 AATTAACCAATTACTCTTTAATTAACCAATTTCATTTTACTTTTTTAATT-ACCA
*
22716 AATTTACCAATT
1 AATTAACCAATT
22728 TTCTTTTACT
Statistics
Matches: 559, Mismatches: 71, Indels: 57
0.81 0.10 0.08
Matches are distributed among these distances:
50 3 0.01
51 61 0.11
52 111 0.20
53 129 0.23
54 137 0.25
55 20 0.04
57 6 0.01
59 62 0.11
60 30 0.05
ACGTcount: A:0.31, C:0.21, G:0.01, T:0.47
Consensus pattern (54 bp):
AATTAACCAATTACTCTTTAATTAACCAATTTCATTTTACTTTTTTAATTACCA
Found at i:22209 original size:108 final size:106
Alignment explanation
Indices: 22016--22340 Score: 456
Period size: 108 Copynumber: 3.0 Consensus size: 106
22006 TTTACTCTTT
* * *
22016 AATTTACCAATTACTCTTTAATTACCCAATTCATCTTATTCTCTAATTACCCAAATTTACCAATT
1 AATTAACCAATTACTCTTTGATTACCCAATTCATCTTATTCTTTAATTACCCAAA-TTACCAATT
* * *
22081 ACACTTTAATTAACCAATTTCATTTTACTTTTTTGATTACCA
65 ACTCTTTAATTACCCAATTTCATTTTACTTTTTTAATTACCA
22123 AATTAACCAATTACTCTTTGATTACCCAATTTCATCTTATTCTTTAATTACCCAAATATACCAAT
1 AATTAACCAATTACTCTTTGATTACCCAA-TTCATCTTATTCTTTAATTACCCAAAT-TACCAAT
22188 TACTCTTTAATTACCCAATTTCATTTTACTTTTTTAATTACCA
64 TACTCTTTAATTACCCAATTTCATTTTACTTTTTTAATTACCA
* * * *
22231 AATTAACCAATTACTCTTTGATTACCAAATTCATTTTACTT-TTTAATTACGCAAGTTAACCAAT
1 AATTAACCAATTACTCTTTGATTACCCAATTCATCTTA-TTCTTTAATTACCCAAATT-ACCAAT
** ** *
22295 TACTCCGTAATTACTAAATTTCCTTTTAC-TTTTTAATTACCA
64 TACTCTTTAATTACCCAATTTCATTTTACTTTTTTAATTACCA
22337 AATT
1 AATT
22341 CACTTTACTC
Statistics
Matches: 199, Mismatches: 15, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
106 18 0.09
107 79 0.40
108 102 0.51
ACGTcount: A:0.33, C:0.21, G:0.02, T:0.44
Consensus pattern (106 bp):
AATTAACCAATTACTCTTTGATTACCCAATTCATCTTATTCTTTAATTACCCAAATTACCAATTA
CTCTTTAATTACCCAATTTCATTTTACTTTTTTAATTACCA
Found at i:22270 original size:25 final size:25
Alignment explanation
Indices: 21925--22983 Score: 618
Period size: 26 Copynumber: 39.6 Consensus size: 25
21915 TCATTACTAA
21925 ATTTTACTCTTTTAATTACCAAATTTTC
1 ATTTTACTC-TTTAATTACCAAA--TTC
* * *
21953 -TCTTACTCTTTAATTGCGCAATTTC
1 ATTTTACTCTTTAATTAC-CAAATTC
21978 ATTTTACTCTTTAATTACCAAATTCC
1 ATTTTACTCTTTAATTACCAAATT-C
*
22004 CTTTTACTCTTTAATTTACC--A---
1 ATTTTACTCTTTAA-TTACCAAATTC
*
22025 A--TTACTCTTTAATTACCCAATTC
1 ATTTTACTCTTTAATTACCAAATTC
* * *
22048 ATCTTATTCTCTAATTACCCAAATTTACC
1 ATTTTACTCTTTAATTA-CCAAA-TT--C
* * *
22077 A-ATTACACTTTAATTAACCAATTTC
1 ATTTTACTCTTTAATT-ACCAAATTC
* *
22102 ATTTTACTTTTTTGATTACCAAATTAACC
1 ATTTTAC-TCTTTAATTACCAAATT---C
* * *
22131 A-ATTACTCTTTGATTACCCAATTTC
1 ATTTTACTCTTTAATTA-CCAAATTC
* *
22156 ATCTTATTCTTTAATTACCCAAATATACC
1 ATTTTACTCTTTAATTA-CCAAAT-T--C
* *
22185 A-ATTACTCTTTAATTACCCAATTTC
1 ATTTTACTCTTTAATTA-CCAAATTC
*
22210 ATTTTACTTTTTTAATTACCAAATTAACC
1 ATTTTAC-TCTTTAATTACCAAATT---C
* *
22239 A-ATTACTCTTTGATTACCAAATTC
1 ATTTTACTCTTTAATTACCAAATTC
* *
22263 ATTTTACTTTTTAATTACGCAAGTTAACC
1 ATTTTACTCTTTAATTAC-CAAATT---C
* ** *
22292 A-ATTACTCCGTAATTACTAAATTTC
1 ATTTTACTCTTTAATTACCAAA-TTC
* *
22317 CTTTTACTTTTTAATTACCAAATTC
1 ATTTTACTCTTTAATTACCAAATTC
* *
22342 ACTTTACTCCTTAATTAACCAAATTTC
1 ATTTTACTCTTTAATT-ACCAAA-TTC
* *
22369 CTTTTACTCTTTAATTACTAAATTC
1 ATTTTACTCTTTAATTACCAAATTC
22394 ATTTTACTCTTTAATTAACCAAATTTACC
1 ATTTTACTCTTTAATT-ACCAAA-TT--C
*
22423 AATTTCCTTTTACTCTTTAATT-TCAAATTC
1 -A-----TTTTACTCTTTAATTACCAAATTC
22453 ATTTTACTCTTTAATTAACCAAATTTACC
1 ATTTTACTCTTTAATT-ACCAAA-TT--C
* *
22482 AATTTCCTTTTACTCTTTAATTACTAGATTC
1 -A-----TTTTACTCTTTAATTACCAAATTC
* *
22513 ATTTTACTCTTTAATTTGCCAATTTC
1 ATTTTACTCTTTAA-TTACCAAATTC
* *
22539 CTTTTACTCTTTAATTACCCAATTC
1 ATTTTACTCTTTAATTACCAAATTC
22564 ATTTTACTCTTTAATTAACCAAATTTC
1 ATTTTACTCTTTAATT-ACCAAA-TTC
* * ** *
22591 CTTTTACTTTTTAATTTATTAATTTC
1 ATTTTACTCTTTAA-TTACCAAATTC
* *
22617 CTTTTACTCTTTAATTACTAAATTC
1 ATTTTACTCTTTAATTACCAAATTC
22642 ATTTTACTCTTTAATTAACCAAATTTC
1 ATTTTACTCTTTAATT-ACCAAA-TTC
* * *
22669 CTTTTACTTTTTAATTAACCAATTTC
1 ATTTTACTCTTTAATT-ACCAAATTC
*
22695 CTTTTACTCTTTAATTAACCAAATTTACC
1 ATTTTACTCTTTAATT-ACCAAA-TT--C
*
22724 AATTTTCTTTTACTCTTTAATTACTAAATTC
1 -A-----TTTTACTCTTTAATTACCAAATTC
22755 ATTTTACTCTTTAATTAACCAAATTTACC
1 ATTTTACTCTTTAATT-ACCAAA-TT--C
*
22784 AATTTCCTTTTACTCTTTAATTACTAAATTC
1 -A-----TTTTACTCTTTAATTACCAAATTC
* * *
22815 ATTTTACTATTTAATTTGCCAATTTC
1 ATTTTACTCTTTAA-TTACCAAATTC
*
22841 CTTTTACTCTTTAATTACCAAATTC
1 ATTTTACTCTTTAATTACCAAATTC
* *
22866 ATTTTACTCTTTAATTTGCCAATTTC
1 ATTTTACTCTTTAA-TTACCAAATTC
* *
22892 CTTTTACTCTTTAATTACCAAATTA
1 ATTTTACTCTTTAATTACCAAATTC
* *
22917 ATTTTGCTCTTTAATTTGCCAAATTTC
1 ATTTTACTCTTTAA-TTACCAAA-TTC
* * * * **
22944 CTTTTACTTTTTGACTA-TGAATTC
1 ATTTTACTCTTTAATTACCAAATTC
*
22968 CTTTTACTCTTTAATT
1 ATTTTACTCTTTAATT
22984 TTTTCTCTTT
Statistics
Matches: 815, Mismatches: 126, Indels: 184
0.72 0.11 0.16
Matches are distributed among these distances:
18 5 0.01
19 11 0.01
20 1 0.00
23 1 0.00
24 33 0.04
25 205 0.25
26 245 0.30
27 139 0.17
28 63 0.08
29 16 0.02
30 7 0.01
31 3 0.00
32 2 0.00
33 10 0.01
34 14 0.02
35 60 0.07
ACGTcount: A:0.29, C:0.20, G:0.02, T:0.49
Consensus pattern (25 bp):
ATTTTACTCTTTAATTACCAAATTC
Found at i:22441 original size:35 final size:35
Alignment explanation
Indices: 22395--22504 Score: 134
Period size: 35 Copynumber: 3.5 Consensus size: 35
22385 ACTAAATTCA
22395 TTTTACTCTTTAATTAACCAAATTTACCAATTTCC
1 TTTTACTCTTTAATTAACCAAATTTACCAATTTCC
*
22430 TTTTACTCTTTAATT--TCAAA-TT--C-A-----
1 TTTTACTCTTTAATTAACCAAATTTACCAATTTCC
22454 TTTTACTCTTTAATTAACCAAATTTACCAATTTCC
1 TTTTACTCTTTAATTAACCAAATTTACCAATTTCC
22489 TTTTACTCTTTAATTA
1 TTTTACTCTTTAATTA
22505 CTAGATTCAT
Statistics
Matches: 62, Mismatches: 2, Indels: 22
0.72 0.02 0.26
Matches are distributed among these distances:
24 15 0.24
26 4 0.06
27 2 0.03
29 2 0.03
30 2 0.03
32 2 0.03
33 4 0.06
35 31 0.50
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (35 bp):
TTTTACTCTTTAATTAACCAAATTTACCAATTTCC
Found at i:22460 original size:59 final size:60
Alignment explanation
Indices: 22354--22589 Score: 339
Period size: 59 Copynumber: 4.1 Consensus size: 60
22344 TTTACTCCTT
*
22354 AATTAACCAAATTTCCTTTTACTCTTTAATTACTAAATTCATTTTACTCTTTAATTAACCA
1 AATTTACC-AATTTCCTTTTACTCTTTAATTACTAAATTCATTTTACTCTTTAATTAACCA
*
22415 AATTTACCAATTTCCTTTTACTCTTTAATTTC-AAATTCATTTTACTCTTTAATTAACCA
1 AATTTACCAATTTCCTTTTACTCTTTAATTACTAAATTCATTTTACTCTTTAATTAACCA
*
22474 AATTTACCAATTTCCTTTTACTCTTTAATTACTAGATTCATTTTACTC--T--TT-----
1 AATTTACCAATTTCCTTTTACTCTTTAATTACTAAATTCATTTTACTCTTTAATTAACCA
* **
22525 AATTTGCCAATTTCCTTTTACTCTTTAATTACCCAATTCATTTTACTCTTTAATTAACCA
1 AATTTACCAATTTCCTTTTACTCTTTAATTACTAAATTCATTTTACTCTTTAATTAACCA
22585 AATTT
1 AATTT
22590 CCTTTTACTT
Statistics
Matches: 157, Mismatches: 8, Indels: 21
0.84 0.04 0.11
Matches are distributed among these distances:
51 44 0.28
53 1 0.01
55 2 0.01
56 2 0.01
58 1 0.01
59 58 0.37
60 42 0.27
61 7 0.04
ACGTcount: A:0.30, C:0.20, G:0.01, T:0.49
Consensus pattern (60 bp):
AATTTACCAATTTCCTTTTACTCTTTAATTACTAAATTCATTTTACTCTTTAATTAACCA
Found at i:22734 original size:35 final size:35
Alignment explanation
Indices: 22681--22806 Score: 155
Period size: 35 Copynumber: 3.9 Consensus size: 35
22671 TTTACTTTTT
*
22681 AATTAACCAATTTCCTTTTACTCTTTAATTAACCA
1 AATTTACCAATTTCCTTTTACTCTTTAATTAACCA
*
22716 AATTTACCAATTTTCTTTTACTCTTTAATT-A-C-
1 AATTTACCAATTTCCTTTTACTCTTTAATTAACCA
*
22748 ----TA--AA-TTCATTTTACTCTTTAATTAACCA
1 AATTTACCAATTTCCTTTTACTCTTTAATTAACCA
22776 AATTTACCAATTTCCTTTTACTCTTTAATTA
1 AATTTACCAATTTCCTTTTACTCTTTAATTA
22807 CTAAATTCAT
Statistics
Matches: 76, Mismatches: 5, Indels: 20
0.75 0.05 0.20
Matches are distributed among these distances:
25 17 0.22
26 3 0.04
27 1 0.01
28 2 0.03
32 2 0.03
33 1 0.01
34 3 0.04
35 47 0.62
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (35 bp):
AATTTACCAATTTCCTTTTACTCTTTAATTAACCA
Found at i:22998 original size:102 final size:102
Alignment explanation
Indices: 22776--22984 Score: 303
Period size: 102 Copynumber: 2.0 Consensus size: 102
22766 TAATTAACCA
* * *
22776 AATTTACCAATTTCCTTTTACTCTTTAATTACTAAATTCATTTTACTATTTAATTTGCCAATTTC
1 AATTTGCCAATTTCCTTTTACTCTTTAATTACCAAATTAATTTTACTATTTAATTTGCCAATTTC
*
22841 CTTTTACTCTTTAATTACCAAATTCATTTTACTCTTT
66 CTTTTACTCTTTAACTACCAAATTCATTTTACTCTTT
* *
22878 AATTTGCCAATTTCCTTTTACTCTTTAATTACCAAATTAATTTTGCTCTTTAATTTGCCAAATTT
1 AATTTGCCAATTTCCTTTTACTCTTTAATTACCAAATTAATTTTACTATTTAATTTGCC-AATTT
* * ** *
22943 CCTTTTACTTTTTGACTA-TGAATTCCTTTTACTCTTT
65 CCTTTTACTCTTTAACTACCAAATTCATTTTACTCTTT
22980 AATTT
1 AATTT
22985 TTTCTCTTTC
Statistics
Matches: 95, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
102 75 0.79
103 20 0.21
ACGTcount: A:0.26, C:0.19, G:0.03, T:0.52
Consensus pattern (102 bp):
AATTTGCCAATTTCCTTTTACTCTTTAATTACCAAATTAATTTTACTATTTAATTTGCCAATTTC
CTTTTACTCTTTAACTACCAAATTCATTTTACTCTTT
Found at i:26661 original size:54 final size:54
Alignment explanation
Indices: 26601--26705 Score: 201
Period size: 54 Copynumber: 1.9 Consensus size: 54
26591 AAGATAACCT
*
26601 TTTTTATCTTCATTCACCATCTCAAATAATGTTTCTCCCGAATAGTTGTGACCC
1 TTTTTATCTTCATTCACCATCTCAAATAATGTTTATCCCGAATAGTTGTGACCC
26655 TTTTTATCTTCATTCACCATCTCAAATAATGTTTATCCCGAATAGTTGTGA
1 TTTTTATCTTCATTCACCATCTCAAATAATGTTTATCCCGAATAGTTGTGA
26706 TCTTTAGTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.42
Consensus pattern (54 bp):
TTTTTATCTTCATTCACCATCTCAAATAATGTTTATCCCGAATAGTTGTGACCC
Found at i:30125 original size:33 final size:33
Alignment explanation
Indices: 30087--30170 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
30077 CGCCCTAGGA
* **
30087 GGGCGGCATGGCCATGGTTAGGCCGCCCACGCTT
1 GGGCGGCATGACCATGGCAAGGCCGCCCACG-TT
* * *
30121 -GGCGGCATTACCATGGCAATGCCGCCCTCGTT
1 GGGCGGCATGACCATGGCAAGGCCGCCCACGTT
*
30153 GGGCGGCATGTCCATGGC
1 GGGCGGCATGACCATGGC
30171 TTGCCGCCCT
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
32 2 0.05
33 39 0.95
ACGTcount: A:0.13, C:0.32, G:0.36, T:0.19
Consensus pattern (33 bp):
GGGCGGCATGACCATGGCAAGGCCGCCCACGTT
Found at i:31498 original size:19 final size:19
Alignment explanation
Indices: 31467--31514 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
31457 CTATTAGGGT
31467 TTAATTAATTAATGTTATT-A
1 TTAATT-ATTAATG-TATTCA
*
31487 TTATTTATTAATGTATTCA
1 TTAATTATTAATGTATTCA
31506 TTAATTATT
1 TTAATTATT
31515 TCCGCAGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.16
19 16 0.64
20 5 0.20
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.58
Consensus pattern (19 bp):
TTAATTATTAATGTATTCA
Found at i:37732 original size:9 final size:9
Alignment explanation
Indices: 37718--37744 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
37708 GCGCTCCATA
37718 GCTACCCAC
1 GCTACCCAC
37727 GCTACCCAC
1 GCTACCCAC
37736 GCTACCCAC
1 GCTACCCAC
37745 CTCCCTTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.56, G:0.11, T:0.11
Consensus pattern (9 bp):
GCTACCCAC
Found at i:38303 original size:26 final size:27
Alignment explanation
Indices: 38253--38304 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
38243 GGTTGGAGAA
*
38253 GTTTGAAGAAGTTGTTAGAAAATGAAG
1 GTTTGAAGAAGTTGTTAAAAAATGAAG
38280 GTTTGAAGAA-TT-TTAAAAATATGAA
1 GTTTGAAGAAGTTGTTAAAAA-ATGAA
38305 CAAAGGGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 6 0.26
26 7 0.30
27 10 0.43
ACGTcount: A:0.44, C:0.00, G:0.23, T:0.33
Consensus pattern (27 bp):
GTTTGAAGAAGTTGTTAAAAAATGAAG
Found at i:38536 original size:26 final size:21
Alignment explanation
Indices: 38480--38527 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
38470 CCTATTTTGA
38480 ATTTTACATTTAACTTCATTT
1 ATTTTACATTTAACTTCATTT
38501 ATTTTACATTTAACTTCATTT
1 ATTTTACATTTAACTTCATTT
38522 ATTTTA
1 ATTTTA
38528 GGAAACATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTTTACATTTAACTTCATTT
Found at i:40995 original size:24 final size:24
Alignment explanation
Indices: 40943--41000 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
40933 CCACCTGCAC
* *
40943 TTCCTCCACCTCATAATCGGAACG
1 TTCCTCCACCTCAGAATCGGAACA
* *
40967 CTCCTCCACCTCAGAATCGGAATA
1 TTCCTCCACCTCAGAATCGGAACA
40991 TTCCTCCACC
1 TTCCTCCACC
41001 GATTCCCATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.24, C:0.41, G:0.10, T:0.24
Consensus pattern (24 bp):
TTCCTCCACCTCAGAATCGGAACA
Done.