Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014884.1 Corchorus olitorius cultivar O-4 contig14917, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11404
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31


Found at i:886 original size:24 final size:26

Alignment explanation


    Indices: 854--909  Score: 71
    Period size: 26  Copynumber: 2.2  Consensus size: 26

        844 TAGAAGATGC

                *                     
        854 AGAAAGGAATAC-TTTCT-AAATCTA
          1 AGAATGGAATACTTTTCTAAAATCTA

                      *               
        878 AGAATGGAATGCTTTTCTAAAATCTA
          1 AGAATGGAATACTTTTCTAAAATCTA

             *    
        904 ATAATG
          1 AGAATG

        910 TAATTAGTAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 2
        0.84            0.09        0.06

Matches are distributed among these distances:
  24   10  0.37
  25    5  0.19
  26   12  0.44

ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32


Consensus pattern (26 bp):   
AGAATGGAATACTTTTCTAAAATCTA
Done.