Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014886.1 Corchorus olitorius cultivar O-4 contig14919, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67623

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
401--440
11
3.7
11
83
6
55
57
5
10
27
1.52
398--441
21
2.1
21
95
0
79
59
4
11
25
1.51
438--478
4
11.2
4
80
19
54
73
0
0
26
0.84
434--472
17
2.3
17
100
0
78
71
0
0
28
0.86
1055--1087
2
16.5
2
100
0
66
51
0
0
48
1.00
1675--1717
21
2.0
21
86
0
59
23
27
11
37
1.89
18970--19013
23
2.0
22
81
4
52
31
9
13
45
1.75
22632--22661
16
1.9
16
93
6
53
33
13
6
46
1.69
24078--24106
14
2.0
15
93
6
51
0
24
0
75
0.80
26996--27039
15
2.9
15
86
6
61
9
15
36
38
1.80
26994--27113
16
7.6
16
74
10
104
9
16
38
35
1.81
26996--27113
32
3.7
31
86
5
148
9
16
38
36
1.80
27589--27660
31
2.3
31
75
17
78
61
8
4
26
1.43
27971--28021
23
2.0
25
82
14
61
43
1
3
50
1.31
31031--31111
22
3.7
22
78
8
103
51
0
4
43
1.23
31151--31202
20
2.6
20
84
6
70
42
42
11
3
1.59
31671--31712
2
21.0
2
90
0
66
47
0
4
47
1.23
33168--33218
23
2.2
23
79
6
59
9
17
41
31
1.82
40195--40266
31
2.3
31
75
13
76
23
4
11
61
1.47
40518--40575
18
3.4
18
72
11
50
43
3
0
53
1.17
40716--40784
16
4.3
15
76
10
66
42
39
13
5
1.68
41985--42031
20
2.2
21
78
17
53
42
0
6
51
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42433--42588
76
2.0
77
98
1
305
11
23
36
28
1.90
42600--42746
73
2.0
73
98
0
285
26
17
36
19
1.94
47451--47495
16
2.8
16
79
0
54
15
8
17
57
1.63
47808--47842
11
3.2
11
83
0
52
77
17
5
0
0.96
55775--55814
18
2.3
18
91
4
64
37
7
7
47
1.60
55775--55814
17
2.3
18
86
4
55
37
7
7
47
1.60
56460--56518
30
2.0
30
90
6
93
61
5
11
22
1.50

Tables:   1

The End!