Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014891.1 Corchorus olitorius cultivar O-4 contig14924, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12872
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33


Found at i:12828 original size:16 final size:16

Alignment explanation


    Indices: 12807--12837  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

      12797 TCCTAACCAA

                            
      12807 AACAATTAGAAAAACC
          1 AACAATTAGAAAAACC

                    *      
      12823 AACAATTATAAAAAC
          1 AACAATTAGAAAAAC

      12838 AATATCATCA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.65, C:0.16, G:0.03, T:0.16


Consensus pattern (16 bp):   
AACAATTAGAAAAACC
Done.