Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014894.1 Corchorus olitorius cultivar O-4 contig14927, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48165

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2264--3017
221
3.5
222
90
4
1146
35
7
20
36
1.81
3513--4333
222
3.7
222
89
1
1256
35
21
7
35
1.81
4350--5542
223
5.4
222
89
2
1768
36
19
7
36
1.80
5339--5929
194
2.9
194
85
6
673
35
20
7
37
1.80
5533--5929
217
1.8
217
91
3
656
35
21
7
36
1.82
8064--8105
19
2.2
19
91
0
66
50
9
16
23
1.75
11064--11088
13
1.9
13
100
0
50
0
12
0
88
0.53
12346--12404
6
10.0
6
92
3
102
49
18
0
32
1.48
18638--18677
21
1.9
21
85
10
55
17
32
25
25
1.97
21658--21683
7
3.7
7
100
0
52
73
0
26
0
0.84
22666--22696
7
4.6
7
96
4
55
0
9
0
90
0.46
24116--24171
28
2.0
28
100
0
112
53
32
3
10
1.53
24946--24993
18
2.8
17
79
17
55
41
0
0
58
0.98
25403--25441
11
3.6
11
80
19
55
58
12
0
28
1.34
25403--25442
21
1.9
21
100
0
80
57
12
0
30
1.36
25401--25448
21
2.3
21
88
0
78
56
10
2
31
1.45
26587--26853
125
2.2
124
93
2
457
52
2
8
36
1.48
26712--27118
149
2.7
149
93
0
690
50
3
9
35
1.53
28349--28725
39
9.7
38
80
9
370
23
19
18
37
1.94
28380--28789
116
3.5
113
77
10
328
23
19
19
38
1.94
30968--31009
23
1.9
22
85
9
59
59
11
16
11
1.61
45752--46075
39
8.3
39
86
4
404
24
19
18
38
1.93

Tables:   1

The End!