Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014895.1 Corchorus olitorius cultivar O-4 contig14928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2724
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29


Found at i:248 original size:21 final size:22

Alignment explanation


    Indices: 218--259  Score: 59
    Period size: 23  Copynumber: 1.9  Consensus size: 22

        208 CACGTGAGAT

                                  
        218 CAAAAATTG-AGAGACAAAACG
          1 CAAAAATTGAAGAGACAAAACG

                 *               
        239 CAAAACTTGAAAGAGACAAAA
          1 CAAAAATTG-AAGAGACAAAA

        260 ATAACTGCTC


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21    8  0.44
  23   10  0.56

ACGTcount: A:0.60, C:0.14, G:0.17, T:0.10


Consensus pattern (22 bp):   
CAAAAATTGAAGAGACAAAACG
Done.