genome.fa.s14896.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014896.1 Corchorus olitorius cultivar O-4 contig14929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81953

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14744--14781	7	5.3	7	87	6	58	52	0	0	47	1.00
15795--15823	13	2.2	13	100	0	58	27	0	24	48	1.51
20844--20883	20	2.0	20	85	4	55	35	0	5	60	1.19
21184--21668	35	14.0	35	75	9	316	38	8	16	36	1.79
21188--21672	70	7.0	70	78	7	434	38	8	16	36	1.80
21189--21629	141	3.2	137	80	7	439	39	9	15	36	1.80
21435--21495	18	3.4	18	72	20	65	37	6	19	36	1.78
21819--21960	59	2.4	58	83	4	187	43	2	21	32	1.67
24003--24175	40	4.3	41	70	11	131	45	17	15	21	1.85
24703--24727	10	2.5	10	100	0	50	32	16	36	16	1.90
26370--26463	43	2.2	43	94	0	161	51	13	10	24	1.73
26560--26617	27	2.1	27	93	0	98	46	24	10	18	1.80
26747--26772	10	2.6	10	100	0	52	0	19	38	42	1.51
30446--30809	184	2.0	183	99	0	719	36	14	14	34	1.87
31913--31965	27	2.0	27	88	0	79	35	22	20	20	1.96
33479--34533	527	2.0	526	94	0	1851	27	14	24	32	1.95
34006--35240	643	1.9	644	93	0	2125	27	14	23	34	1.94
36185--36232	24	2.0	24	95	0	87	54	0	18	27	1.44
48366--48399	12	2.8	13	91	8	54	41	8	17	32	1.80
67561--67737	89	2.0	89	88	0	264	33	16	20	29	1.94
70134--70166	17	1.9	17	88	11	50	30	3	9	57	1.45
71314--71368	19	2.8	19	79	12	67	58	0	14	27	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71314--71361	20	2.4	21	86	10	66	60	0	14	25	1.34
78705--78785	37	2.2	37	84	2	108	24	34	22	18	1.96
80868--80945	39	2.0	39	92	0	129	10	28	14	47	1.76
81257--81281	2	12.5	2	100	0	50	0	0	48	52	1.00
81281--81311	2	15.0	2	93	6	53	48	3	0	48	1.17
81566--81632	21	3.2	21	66	16	57	52	11	1	34	1.48

Tables:   1

The End!