Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014897.1 Corchorus olitorius cultivar O-4 contig14930, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56347

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
159--238
39
2.0
40
92
2
135
51
8
3
36
1.51
349--758
204
2.0
201
94
2
723
36
11
8
43
1.71
2587--2695
58
1.9
57
90
1
173
33
18
14
33
1.91
13280--13338
20
2.8
21
74
5
57
25
16
20
37
1.93
13913--13960
23
2.0
24
84
4
62
60
4
12
22
1.49
15098--15141
23
1.9
23
95
0
79
13
4
38
43
1.65
23396--23429
17
2.0
17
94
0
59
67
0
0
32
0.91
24615--24645
16
1.9
16
93
0
53
29
0
0
70
0.87
24957--24990
17
1.9
18
94
5
61
17
11
14
55
1.68
25651--25687
2
18.5
2
94
0
65
48
0
0
51
1.00
27130--27172
21
2.0
21
100
0
86
13
27
16
41
1.86
28142--28178
19
2.0
19
89
5
58
35
0
0
64
0.94
31558--31624
33
2.0
33
100
0
134
32
14
25
26
1.95
32936--32986
20
2.5
21
81
15
63
17
9
17
54
1.69
33962--34018
26
2.2
25
90
3
87
45
15
17
21
1.85
38000--38602
35
17.2
35
85
4
714
18
19
20
41
1.90
38013--38602
176
3.4
176
86
3
787
18
18
20
42
1.90
47116--47250
66
2.0
66
98
0
261
47
12
8
31
1.71
48124--48197
27
2.7
27
89
2
112
18
16
28
36
1.93
51167--51252
40
2.1
41
80
6
95
24
11
17
46
1.81
53003--53063
28
2.2
28
96
0
113
18
34
26
21
1.96
55862--55907
18
2.6
17
83
6
65
43
15
13
28
1.83

Tables:   1

The End!