Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014898.1 Corchorus olitorius cultivar O-4 contig14931, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104996

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12599--12755
60
2.6
60
84
2
199
33
17
18
29
1.94
13440--13487
16
2.8
18
75
15
57
45
2
2
50
1.25
15600--15727
60
2.2
60
84
1
159
39
18
11
30
1.87
19506--19540
17
2.0
18
94
5
63
45
17
11
25
1.81
27487--27526
21
1.9
21
84
0
53
2
22
2
72
1.09
27485--27532
21
2.3
21
74
0
51
2
27
2
68
1.11
33312--33364
25
2.1
25
96
0
97
32
22
15
30
1.94
37401--37438
2
19.0
2
100
0
76
50
0
0
50
1.00
43503--43549
15
3.1
14
87
6
58
2
17
2
78
0.94
43641--43673
6
5.8
6
89
10
52
0
0
12
87
0.53
43641--43672
17
1.9
17
93
6
57
0
0
12
87
0.54
45846--45903
28
2.0
29
83
3
73
46
13
22
17
1.83
46155--46668
65
7.9
64
85
7
452
37
15
24
22
1.93
46158--46683
164
3.2
162
87
4
763
38
15
24
22
1.92
46155--46632
229
2.1
229
95
0
875
37
15
24
23
1.93
46680--47037
39
9.2
39
87
5
476
33
19
18
28
1.96
47072--47285
108
2.1
105
84
10
282
42
7
21
28
1.79
47211--47720
8
70.7
7
65
22
149
45
4
19
30
1.69
47242--47659
36
11.4
36
78
11
404
44
4
20
30
1.71
47583--47763
85
2.1
85
93
0
308
45
2
21
30
1.66
47664--47744
36
2.2
36
86
0
108
44
2
23
29
1.66
47211--47714
22
23.7
20
69
19
159
45
3
19
30
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50412--50468
14
4.3
13
81
14
64
38
14
7
40
1.73
50412--50468
27
2.2
26
84
15
73
38
14
7
40
1.73
50996--51073
37
2.1
39
90
4
124
24
16
7
51
1.71
54964--55010
15
3.2
14
80
14
51
2
14
2
80
0.89
56874--56931
28
2.0
29
83
3
73
46
13
22
17
1.83
58056--58087
16
2.0
17
88
11
50
12
28
3
56
1.51
68063--68126
22
2.9
22
80
0
83
54
3
28
14
1.55
68207--68348
75
1.9
76
83
4
189
46
5
25
22
1.73
68299--68484
44
4.1
46
91
4
281
46
5
19
28
1.72
68462--68503
19
2.2
19
86
0
57
54
0
28
16
1.42
68420--68602
59
2.9
65
84
14
274
51
3
20
24
1.64
68548--69530
47
20.6
47
81
9
940
49
6
19
24
1.72
68833--68857
8
3.1
8
100
0
50
76
0
24
0
0.80
68846--69541
136
5.0
136
85
5
824
48
7
20
23
1.74
69526--69626
22
4.4
20
71
22
58
56
7
21
13
1.63
69565--69622
28
2.1
28
86
0
80
60
6
20
12
1.54
79731--79783
17
3.1
17
91
0
79
11
24
3
60
1.47
79731--79790
17
3.5
17
90
2
75
11
25
3
60
1.47
79978--80037
31
1.9
31
89
0
93
40
11
18
30
1.86
80072--80139
33
2.1
34
86
5
95
17
30
5
45
1.72
82956--83558
300
2.0
300
99
0
1197
27
17
21
34
1.95

Tables:   1

The End!