Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014899.1 Corchorus olitorius cultivar O-4 contig14932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39504

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2456--2487
2
16.0
2
93
0
55
46
0
3
50
1.17
12590--12620
14
2.2
14
94
0
53
70
16
0
12
1.16
12690--12953
128
2.1
129
84
6
340
34
18
6
41
1.76
15395--15450
22
2.5
22
85
0
76
41
10
8
39
1.71
15657--15843
22
8.5
22
73
9
116
36
17
10
36
1.83
15912--16100
22
8.5
22
70
8
105
36
15
11
37
1.83
18729--18762
17
2.0
17
100
0
68
52
5
17
23
1.66
23644--23670
14
1.9
14
100
0
54
44
14
7
33
1.73
24940--25099
60
2.7
60
95
2
277
35
19
18
26
1.95
24972--25072
29
3.4
28
69
16
87
33
19
19
26
1.96
25144--25305
60
2.7
58
86
6
225
27
20
17
33
1.96
25144--25309
29
5.5
30
67
18
96
28
21
18
32
1.96
28149--28201
27
2.0
27
92
0
88
37
26
16
18
1.93
36029--36079
21
2.4
21
83
0
57
33
25
21
19
1.97
37407--37523
45
2.5
46
79
9
148
26
23
7
42
1.80
37407--37521
46
2.5
46
81
8
137
26
22
7
42
1.81
37562--37593
13
2.3
15
89
10
50
0
18
0
81
0.70

Tables:   1

The End!