Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014900.1 Corchorus olitorius cultivar O-4 contig14933, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7413
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:2900 original size:23 final size:23

Alignment explanation


    Indices: 2872--2934  Score: 72
    Period size: 23  Copynumber: 2.7  Consensus size: 23

       2862 GCCTTTGAAC

                                   
       2872 TTTAGTTATACTTTGGCTTAAAT
          1 TTTAGTTATACTTTGGCTTAAAT

                    **   *      *  
       2895 TTTAGTTAGGCTTGGGCTTAGAT
          1 TTTAGTTATACTTTGGCTTAAAT

             *               
       2918 TCTAGTTTATACTTTGG
          1 TTTAG-TTATACTTTGG

       2935 ATTTAGTTCC


Statistics
Matches: 31,  Mismatches: 8, Indels: 1
        0.77            0.20        0.03

Matches are distributed among these distances:
  23   23  0.74
  24    8  0.26

ACGTcount: A:0.21, C:0.10, G:0.21, T:0.49


Consensus pattern (23 bp):   
TTTAGTTATACTTTGGCTTAAAT
Done.