Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014901.1 Corchorus olitorius cultivar O-4 contig14934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100074

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10859--10913
17
3.3
16
77
7
56
18
7
18
56
1.64
13499--13523
10
2.5
10
100
0
50
28
8
20
44
1.79
16400--16448
25
1.9
26
83
4
64
40
0
46
12
1.41
19892--19939
24
2.0
25
83
4
62
70
6
6
16
1.28
21599--21628
15
2.0
15
93
0
51
43
26
10
20
1.83
26700--26754
16
3.4
16
80
9
76
5
14
41
38
1.69
26682--26754
32
2.3
32
88
2
112
8
15
39
36
1.77
26744--26797
6
9.3
6
75
15
51
3
18
46
31
1.67
26744--26797
23
2.3
23
90
6
83
3
18
46
31
1.67
26922--26978
5
11.8
5
72
20
50
56
3
0
40
1.17
26922--26978
13
3.9
14
78
17
71
56
3
0
40
1.17
26922--26978
22
2.6
23
77
8
73
56
3
0
40
1.17
27505--27544
2
20.0
2
89
0
62
45
0
5
50
1.23
27592--27646
27
2.0
27
100
0
110
40
3
3
52
1.36
27598--27651
14
3.9
14
74
13
58
42
1
1
53
1.22
27761--27807
6
8.2
6
83
6
53
2
25
48
23
1.62
27761--27804
23
1.9
23
95
0
79
2
25
50
22
1.61
27811--27854
16
2.8
16
89
0
70
6
15
40
36
1.74
27794--27854
32
1.9
32
86
6
88
4
19
40
34
1.73
29319--29362
23
1.9
23
95
0
79
29
11
20
38
1.87
36967--37060
45
2.2
43
84
7
129
37
20
7
35
1.81
38904--38953
19
2.7
18
82
14
57
2
8
14
76
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44704--44744
16
2.7
16
88
7
59
29
0
2
68
1.03
44717--44747
13
2.4
13
100
0
62
29
0
0
70
0.87
44761--44793
18
1.9
18
88
11
52
48
6
18
27
1.71
56974--57075
10
10.3
10
69
14
68
61
4
2
30
1.31
56958--57075
29
4.0
29
96
2
209
61
5
3
29
1.36
72865--72949
44
1.9
44
80
4
100
42
7
10
40
1.67
76558--76596
21
1.9
21
89
5
62
53
17
0
28
1.44
76959--77000
21
2.0
21
100
0
84
19
19
28
33
1.96
77115--77156
21
2.0
21
85
0
57
26
14
30
28
1.95
78846--78874
15
1.9
15
100
0
58
51
27
6
13
1.66
79460--79539
33
2.5
32
85
2
97
26
7
22
43
1.79
81405--81446
21
2.0
21
95
0
75
21
19
28
30
1.97
82242--82289
21
2.3
20
78
3
60
16
45
2
35
1.59
84893--84968
27
2.8
27
85
0
98
39
27
17
15
1.90
85547--85586
21
1.9
21
84
0
53
45
0
0
55
0.99
88803--88835
15
2.1
16
88
5
50
51
27
6
15
1.66
90438--90474
18
2.1
17
90
5
56
62
8
18
10
1.52
96670--96695
13
2.0
13
100
0
52
53
0
23
23
1.46
98149--98212
21
3.2
20
82
8
76
37
12
20
29
1.89
98155--98212
19
2.9
19
84
5
71
37
12
20
29
1.89
98109--98528
215
2.0
214
87
0
615
33
12
25
27
1.93
99348--99506
80
2.0
79
93
1
273
32
11
32
23
1.91

Tables:   1

The End!