Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014902.1 Corchorus olitorius cultivar O-4 contig14935, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37279

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1841--1881
19
2.2
19
100
0
82
46
9
14
29
1.77
5073--5111
15
2.6
15
87
0
51
69
2
0
28
1.02
12061--12101
19
2.2
18
86
4
55
31
17
2
48
1.60
12586--12615
15
2.0
15
100
0
60
46
20
13
20
1.83
14303--14330
14
2.0
14
100
0
56
42
0
7
50
1.30
17115--17152
20
1.9
20
84
10
51
5
15
0
78
0.91
17152--17197
17
2.8
17
78
15
51
6
41
8
43
1.61
18593--18639
8
6.2
8
85
14
73
25
21
0
53
1.46
18592--18643
21
2.6
21
87
6
81
25
21
0
53
1.45
18585--18639
29
1.9
28
92
3
92
23
18
0
58
1.39
20228--20274
17
2.7
18
81
12
53
46
0
23
29
1.52
20896--21164
131
2.0
134
92
3
454
43
15
18
22
1.88
21961--22050
31
2.9
30
75
4
90
38
13
8
38
1.76
22387--22417
12
2.6
12
94
0
53
61
0
16
22
1.34
30019--30086
27
2.5
26
74
6
73
45
23
13
17
1.84
31787--31811
11
2.3
11
100
0
50
56
28
0
16
1.41
33919--34006
28
3.1
28
100
0
176
40
25
10
23
1.86
36631--36655
11
2.3
11
100
0
50
56
28
0
16
1.41

Tables:   1

The End!