Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014904.1 Corchorus olitorius cultivar O-4 contig14937, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20660

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
561--856
163
1.8
162
87
0
439
29
12
25
32
1.92
853--1309
231
2.0
226
90
2
725
36
21
11
31
1.88
6185--6234
22
2.1
25
85
14
70
74
16
10
0
1.08
6189--6238
6
8.2
6
81
14
50
72
16
12
0
1.13
9516--9563
25
1.9
25
86
0
69
45
14
14
25
1.83
10253--10303
17
3.1
17
91
2
86
70
15
11
1
1.25
10248--10282
11
3.2
11
87
0
52
74
17
8
0
1.06
10252--10303
6
9.2
6
77
10
56
71
15
11
1
1.23
10966--11068
32
3.2
32
92
0
179
19
8
33
38
1.82
10969--11054
16
5.4
16
70
10
77
23
6
31
38
1.81
11300--11351
16
3.4
16
80
15
65
1
9
28
59
1.40
11276--11351
32
2.4
31
84
2
89
6
10
28
53
1.60
11506--11609
32
3.1
33
81
8
120
45
15
14
25
1.84
12124--12167
21
2.1
21
91
0
70
29
6
20
43
1.78
12312--12341
7
4.1
7
95
4
51
53
3
0
43
1.17
15446--15470
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!