Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014906.1 Corchorus olitorius cultivar O-4 contig14939, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90842

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2714
320
8.4
320
88
3
3756
33
18
15
32
1.92
1--2714
647
4.2
643
88
3
3834
33
18
15
32
1.92
2841--2867
2
13.5
2
100
0
54
51
0
0
48
1.00
31267--31324
30
1.9
30
92
0
98
36
3
34
25
1.73
32795--32821
7
3.9
7
100
0
54
29
25
14
29
1.95
46608--46641
5
6.8
5
96
0
59
85
0
14
0
0.60
49202--49231
5
6.2
5
96
3
53
0
0
16
83
0.65
49197--49232
15
2.4
15
85
0
54
0
2
13
83
0.76
56992--57028
18
2.1
18
89
0
56
45
13
18
21
1.84
64319--64354
18
2.0
18
88
0
54
30
47
5
16
1.70
69627--69701
27
2.8
25
77
16
71
2
41
0
56
1.13
69626--69714
21
4.1
22
67
25
64
2
40
0
57
1.11
88942--90257
332
4.0
330
77
8
1029
32
14
14
37
1.87

Tables:   1

The End!