Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014908.1 Corchorus olitorius cultivar O-4 contig14941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97911
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:2298 original size:17 final size:16
Alignment explanation
Indices: 2274--2312 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
2264 CAAATTCGCC
2274 TCTTTTCCTTATTGTTTT
1 TCTTTTCCTT-TT-TTTT
2292 T-TTTTCCTTTTTTTT
1 TCTTTTCCTTTTTTTT
2307 TCTTTT
1 TCTTTT
2313 TTTTTTCAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 5 0.25
16 6 0.30
17 8 0.40
18 1 0.05
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (16 bp):
TCTTTTCCTTTTTTTT
Found at i:2317 original size:10 final size:11
Alignment explanation
Indices: 2288--2319 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
2278 TTCCTTATTG
2288 TTTTTTTTTCC
1 TTTTTTTTTCC
*
2299 TTTTTTTTTCT
1 TTTTTTTTTCC
2310 TTTTTTTTTC
1 TTTTTTTTTC
2320 AGTTCACACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTCC
Found at i:4248 original size:332 final size:333
Alignment explanation
Indices: 3632--9639 Score: 6040
Period size: 332 Copynumber: 18.2 Consensus size: 333
3622 AGGATTGATA
* *
3632 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTAAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
* * * *
3697 TTTTTCGGGTCATTTTTTTGCAAACTTTTAGCCAAAATCGTGTAC-AACCATCACGATTTTTGCC
66 TTTTTCGGGTCA-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
* * * *
3761 TAAAAACGCGCTCCGGGGTCCGA-CTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAT
130 TAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAC
* * * ** *
3825 TTCTATATTCATCTAACCAAATCTCGGCCACATTGGATTTAATAATTTGTTTTTACGAGCATCTA
195 ATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * *
3890 AATCATGTATCGATTTAATCAGAAATTAATTCAGAAAAAATAGGAAAAGCGATATTAGATGCTTG
260 AATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTTG
3955 AAAAGCCCT
325 AAAAGCCCT
* * * *
3964 TCAATCTTTTTGGCGTTGAATTATATAT-TTTTTCTGAGTATTATGGCCAAAAACTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
* * * * **
4028 CTTTTCGGGTCATTTTTTGCAAAATTTTAGCTGAAATTGTGTACTAACCATCACAGTTTTTCCCT
66 TTTTTCGGGTCATTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCT
* * * * *
4093 AAAAACGGGTTCGGGGGCCCCAGCTTAGTTTTGCTTGATTTTTGGCGCCCAGACTCCTTGATACA
131 AAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAACA
* * * * *
4158 TATATATGCATCTAACCAAATCTCAACAACGA-TGGATTTAGGGATTTGTTTTTACGAGCATCTA
196 TATATATTCATCTAACCAAATCTCAGCCAC-ATTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * * * *
4222 AATCTTGTTTCCAATTAATTAGAAATTATTTCGGAAAAAA-ATGGAAAAAATGATATTAGATGCG
260 AATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATA-GG-AAAAACGATATTAGATGCT
* * *
4286 CGAAAAACCAT
323 TGAAAAGCCCT
* * * *
4297 TCAAATCTTTTTGGTGATGAATTATATA-CTTTTTATGAGTATTGTGGTTAAAAATTGAGGAAAA
1 TC-AATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAA
* * * *
4361 ACTTTTCGGGTCATTTTTTGCAAATTTTTAGCCGAAATCGTGTAATAACCATCACGATTTTTGGC
65 ATTTTTCGGGTCATTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
* * * * *
4426 TAAAAATGCGTTTCGGGGCCCCAGCTCAGTTTTCCTTGATTTATGGCGCCCAAACTCCTAGAAAC
130 TAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAC
* * ** *
4491 ATATATATTCATCTAACCAAATCTCAACCACCTTAAATTTAAGGATTTGTTTTTACGAGCATTTG
195 ATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * *
4556 AATCTTGTTTCGATTTAATTGGAAATTAATTCAGGAAAAAAATTGGAAAAACGATATTAGGTGCT
260 AATCTTGTTTCGATTTAATTAGAAATTAATTCA-G-AAAAAATAGGAAAAACGATATTAGATGCT
* *
4621 CGAAAAACCCT
323 TGAAAAGCCCT
* * *
4632 TCAATCTTTTTGGCGTTGAATTATATATATTTTTAGGA-TAATTGTTGTCAAAAACTGAGGAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGT-ATTGTGGTCAAAAATTGAGGAAAA
* * * ** * *
4696 ATTTTTTGGATCTTTTTTTATAAAATTTTAGCCGAAATCATGTACTAACTATCACGGTTTTTGGC
65 ATTTTTCGGGTCATTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
* * * * * *
4761 TAAAAACGCGTTCCGGGACTCCATCTCAGTTTTGCTTGATTTTTGGAGCCCAAACTCCATGAAAA
130 TAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAC
* * * * *
4826 ATATATATTCATTTAACCAAATCTAAGTCAC---GTATTTAAGGATTT-TCTTTT-CGAGCATTT
195 ATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGT-TTTTACGAGCATCT
* * * *
4886 GAATCTTGTTTCGATTTAATTAGAAATTAATTCAGGAAAAAA-ATGCAAAAACGCTATTATATAC
259 GAATCTTGTTTCGATTTAATTAGAAATTAATTCA-GAAAAAATA-GGAAAAACGATATTAGATGC
*
4950 TTGAAAATCCCT
322 TTGAAAAGCCCT
* *
4962 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTAGTCAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
* ** * *
5027 TTTTTCGGGTAATTTTTTTGCAATTTTTTA-CCGAAATCGTGTAATAACCATAACGGTTTTTGGC
66 TTTTTCGGGTCA-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
* * * * * * *
5091 TAAAAACGTGTTCCGGGGCCCGA-CTCAGTTTGGCTTGATTTTCGGCGCACAGACTCCTTGAAAT
130 TAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAC
* * * * * ** * ** *
5155 TTCTATATTCATCGAACAAAATTTTGGCCACATTAGATTTAATAATTTGTTTTTATGAGCATCTG
195 ATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * * * **
5220 AATCATGTTTCGATTTCATCAGAAACTAATTCAGAAAAAATAGGAAAAAAGATATTAGATGCGCG
260 AATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTTG
5285 AAAAGCCCT
325 AAAAGCCCT
* * * * * * ** *
5294 TCAATCTTTTTGTCATTGAATTACATATATATTAATGAGAATTAAGGTAAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
** * *
5359 TTTTTCGGGTCATTTTTTTGCAAAATTTTAGATGAAATTGTGTGCTAACCATCACGGTTTTTGGC
66 TTTTTCGGGTCA-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
* * * * *
5424 TGAAAACGCGTTCCGGGGCCCGA-CTCAGTTTTGCTTGATTTTTAGCG-CCAGACTCCTTGAAAT
130 TAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAC
* * * * * *
5487 ATCTATATTCATCTAACCAAATCTCGGCCACATTGGATTTGAGGATTCGATTTTACGAGCATTTG
195 ATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * **
5552 AATCATGTTTGGATTTAATCAGAAATTAATTCAGAAAAAAAATAGGAAAAGTGATATTAGATGCT
260 AATCTTGTTTCGATTTAATTAGAAATTAATTCAG--AAAAAATAGGAAAAACGATATTAGATGCT
*
5617 TGAAAAGCCTT
323 TGAAAAGCCCT
* * **
5628 TCAATCTTTTTGGCGTTGAGTTACATAT-TTCATATGAGTATTTTGTGGTCAAAAATTGAGGAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTA--TTGTGGTCAAAAATTGAGGAAA
* * * * *
5692 AATTTTTCGGAT-GTTTTTTCGCAAAATTTTAGCCGAAATCATGTATTAACCATCATGGTTTTTG
64 AATTTTTCGGGTCATTTTTT-GCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
* * * * * * * *
5756 ACTAAAAACGCGTTCCGGGACTCCATCTCAGTTTAGCTTGATTTTTTGTGCCCAAACTCCTTGGA
128 GCTAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAA
** *
5821 ACATATATATTCATCTAACCAAATCTCAGCCATGTTGTATTTAAGGATTT-TCTTTT-CGAGCAT
193 ACATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGT-TTTTACGAGCAT
* * * * *
5884 TTGAATCTTGTTTCGATTCAATTAGAAATTAATTCAGAAAAAAT-GCAAAAACAATATTATATAC
257 CTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATA-T-TAGA-
* *
5948 TTGAAATTTGAAAATCCCT
319 -TG---CTTGAAAAGCCCT
* * *
5967 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAATA-TGAAGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
** *
6031 TTTTTCGGGTCATTTTTTTGCAAAATTTTAGATGAAATCGTGTACTAACCATCACGATTTTTGGC
66 TTTTTCGGGTCA-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
** * * * * *
6096 TAAAAACGCGTTCC-GGGAACAAACTCA-TTGTTGATTGATTTTTAGCGCCCAGACTCCTTGAAA
130 TAAAAACGCGTTCCGGGGCCCCAGCTCAGTT-TTGCTTGATTTTTGGCGCCCAAACTCCTTGAAA
* * * * * *
6159 TATCTATATTCATCAAACCAAATCTCGGCCACATTGGATTTAAGGATTTGATTTTAGGAGCATCT
194 CATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT
* * *
6224 GAAT-TATGTTTGGATTTAATCAGAAATTAATTCAGAAAAAAATAGGAAAAGCGATATTAGATGC
259 GAATCT-TGTTTCGATTTAATTAGAAATTAATTCAG-AAAAAATAGGAAAAACGATATTAGATGC
*
6288 TTGAAAAGCCTT
322 TTGAAAAGCCCT
* * * ** * **
6300 TCAATATTTTTGGCGTTGAGTTACATAT-TTCATATGAGTATTCTGGGAAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
*
6364 TTTTTCGGGTCATTTTTTGC--ATTCTTTAGCCGAAATCGTG---TAACCATCACGGTTTTTGGC
66 TTTTTCGGGTCATTTTTTGCAAAAT-TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
* * * * * * *
6424 CAAAAACGCGTTCCAGGGCCACAACTCAGTTTTGCTTGATTTTTGGCGCTCAAACCCCTTGAAAA
130 TAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAC
* * * *
6489 ATATATATTCATCTAACCAAATCTCAGCCACGTTGGACTTAAGGATTTGTTTATACGAGCATTTG
195 ATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* *
6554 AATTTTGTTTCGATTTAATTAGAAATTAATTCTGGAAAAAA-ATGGAAAAACGATATTAGATGCT
260 AATCTTGTTTCGATTTAATTAGAAATTAATTC-AGAAAAAATA-GGAAAAACGATATTAGATGCT
*
6618 CGAAAAG-CCT
323 TGAAAAGCCCT
* * * * *
6628 TCAATATTTTTGGAGCTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGACGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
* ** * * * * *
6693 TCTTTTCGGATGTTTTTTTCGCAAAATTTTAGCCGAAATCATGTATTAACCACCATGGTTTTTGT
66 T-TTTTCGGGTCATTTTTT-GCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * *
6758 CTAAAAACGCGTTCCGGGACTCCATCTCA-TTTTAGCTTGATTTTTGGTGCCCAAACTCCTTGAA
129 CTAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTT-GCTTGATTTTTGGCGCCCAAACTCCTTGAA
* * ** *
6822 ACATATATATTCATCTAACCAAAACCCAGCCATGTTGTATTTAAGGATTT-TCTTTT-CGAGCAT
193 ACATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGT-TTTTACGAGCAT
* * * * *
6885 CTTAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAA-ATGCAAAAATGATATTATATA
257 CTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATA-GGAAAAACGATATTAGATG
*
6949 CTTGAAAATCCCT
321 CTTGAAAAGCCCT
* *
6962 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTATGGTCAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
* * * * * *
7027 TTTTTCGGAT-GTTTTTTCGCAAAATTTTAGCCAAAATCATGTATTAACCATCACGGTTTTTGTC
66 TTTTTCGGGTCATTTTTT-GCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
* * * * * ** **
7091 CAAAAACGCGTTCCGGGACTCCATCTCAGTTTAGCTTGATTTTTGGTACCCAAACTCCTTGATGC
130 TAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAC
** * *
7156 ATATATATTCATCTAACCAAATCTCAGCCATGTTGTATTTAAGGATTT-TCTTTT-CGAGCATTT
195 ATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGT-TTTTACGAGCATCT
* * * *
7219 GAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAT-GCAAAAACGATTTTATATACTT
259 GAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTT
*
7283 GAAAATCCCT
324 GAAAAGCCCT
* * * *
7293 TCAATATTTTTGGCGTTAAATTATATATATTTATATGAGAATTGTGGTCAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
** **
7358 TTTTTCGGGTCATTTTTTGCAAAATTTTAGATGAAAATCGTGTACTAAGAATCACGGTTTTTGGC
66 TTTTTCGGGTCATTTTTTGCAAAATTTTAGCCG-AAATCGTGTACTAACCATCACGGTTTTTGGC
* * * * * *
7423 TAAAAACGCGTTCCGGGGACCGA-CTCAGTTTTGCTTTATTTTTAGCGCCCAGACTCCTTGAAAT
130 TAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAC
* * *
7487 ATCTATATTCATCTAACCAAATCTCGGCCACATTGGATTTAAGGATTTGATTTTACGAGCATCTG
195 ATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* *
7552 AATCATGTTT-GAATTTAATCAGAAATTAATTCAGAAAAATATAGGAAAAGA-GATATTAGATGC
260 AATCTTGTTTCG-ATTTAATTAGAAATTAATTCAGAAAAA-ATAGGAAAA-ACGATATTAGATGC
*
7615 TTGAAAAGCCTT
322 TTGAAAAGCCCT
* * **
7627 TCAATCTTTTTGGCGTTGAGTTACATAT-TTCATATGAGTATTGTTGG-CAAAAATTGAGGAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTG-TGGTCAAAAATTGAGGAAAA
* *
7690 ATTTTTCGGGTCATTTTTAGC--AATGTTTAGCCGAAATCGTGTACTAACCATGACGGTTTTTGG
65 ATTTTTCGGGTCATTTTTTGCAAAAT-TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * * *
7753 CCAAAAACGCGTGCCGCGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCTCAAACCCCTTGAAA
129 CTAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAA
* * *
7818 CATATATATTCATCTAACCAAATCTCAGCCACGTTGGACTTAAGGATTTGTTTTTACGAGCATTT
194 CATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT
* * * *
7883 TAATCTTGTTTCGATTTAATTAGAATTTAATTCAG-GAAAAT-GGAAAAACGATATTAGATGCTC
259 GAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTT
7946 GAAAAGCCCT
324 GAAAAGCCCT
* * * *
7956 TCAATCTTTTTGGCGCTGAATTATATATATTTTTATGAGAATTGTAGTAAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
* * * * * * * * * * *
8021 TTTTTCAGAT-GTTTTTTCGCAAAATTTTATCCAAAATCATATATTATA-TATCATGGTTTTTGT
66 TTTTTCGGGTCATTTTTT-GCAAAATTTTAGCCGAAATCGTGTACTA-ACCATCACGGTTTTTGG
* * * * *
8084 CTAAAAACGCGTTCCGGGACTCCATCTCAGTTTAGCTTGATTTTTGGTGCCCAAACTCCTTGAAA
129 CTAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAA
* ** *
8149 CATATATATTCATCTAACCAAAGCTCAGCCATGTTCTG-TTTAAGGATTT-TCTTTT-CGAGCAT
194 CATATATATTCATCTAACCAAATCTCAGCCACATT-GGATTTAAGGATTTGT-TTTTACGAGCAT
* * * * *
8211 TTAAAATCTTGTTTCGATTTAATTAGAAATTAATTCATAAAAAAAATGCAAAAACGATATTAGAT
257 CT-GAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATA-GGAAAAACGATATTAGAT
* *
8276 ACTTG-AAATCCCT
320 GCTTGAAAAGCCCT
* *
8289 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGCGGTC-AAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
* ** * * *
8353 TTTTTCGGGTCATTTTTTTACAAAATTTTAGATGAAATTGTGTACTAACCACCACAGTTTTTGGG
66 TTTTTCGGGTCA-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT-GG
* * *** * * **
8418 CAAAAAACGAGTTCTATGG-CCCTGCCTCAGTTTTGCATGATTTTTGGCG-TGAAGACTCCTTGA
129 CTAAAAACGCGTTCCGGGGCCCCAG-CTCAGTTTTGCTTGATTTTTGGCGCCCAA-ACTCCTTGA
**** * * * * *
8481 AATGCCTATATTCATCGAACCAAAT-TCCAGCCAAATTCGATTTAACGATTT-TTTTAACGAGCA
192 AACATATATATTCATCTAACCAAATCT-CAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
* * *
8544 TCTGAATCTTGTTTCGATTTAATTAGAAA-TAACTTCAGAAAAAGAT--GCAAAATGATATTAAA
256 TCTGAATCTTGTTTCGATTTAATTAGAAATTAA-TTCAGAAAAA-ATAGGAAAAACGATATTAGA
* *
8606 AG-TGTGAAAAGCCCA
319 TGCT-TGAAAAGCCCT
* * * * *
8621 TCAATCTTTTAGGCGTTAAATTATATAT-TTTTTCTGAGTATTGTGG-CAGAAAA-TAAAGAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCA-AAAATTGAGGAAAA
* * *
8683 AATTTT-GGGTCA------G----TTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGG
65 ATTTTTCGGGTCATTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT-GG
* * * * **
8737 CAAAAAACGAGTTCCGGGG-CCCTGCCTCAGTTTTGCATGATTTTTGGCG-TGAAGACTCCTTGA
129 CTAAAAACGCGTTCCGGGGCCCCAG-CTCAGTTTTGCTTGATTTTTGGCGCCCAA-ACTCCTTGA
**** * * * * *
8800 AATGCCTATATTCATCGAACCAAAT-TCCAGCCAAATTCGATTTAACGATTT-TTTTAACGAGCA
192 AACATATATATTCATCTAACCAAATCT-CAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
* * * * * *
8863 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAA-ATGCAAAATGATATTAGAAG
256 TCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATG
*
8927 -TGTGAAAAGCCCA
321 CT-TGAAAAGCCCT
* * * *
8940 TCAATCTTTTGGGCGTTAAATTATACTAT-TTTTTATGAGTATTGTGGT-AGAAAATTCAGAAAA
1 TCAATCTTTTTGGCGTTGAATTATA-TATATTTTTATGAGTATTGTGGTCA-AAAATTGAG-GAA
* * *
9003 AAATTTTCCGGGTCA------G----TTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTGT
63 AAATTTTTCGGGTCATTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTT-T
* * * * * **
9058 GGGCAAAAAACGAGTTCCGGGG-CCCTGCCTCAGTTTTGCATGATTTTTTGCG-TGAAGACTCCT
127 -GGCTAAAAACGCGTTCCGGGGCCCCAG-CTCAGTTTTGCTTGATTTTTGGCGCCCAA-ACTCCT
**** * * * * *
9121 TGAAATGCCTATATTCATCGAACCAAAT-TCCAGCCAAATTCGATTTAACGATTT-TTTTAACGA
189 TGAAACATATATATTCATCTAACCAAATCT-CAGCCACATTGGATTTAAGGATTTGTTTTTACGA
* * * * * *
9184 GCATCTCAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAA-ATGCAAAATGATATTAG
253 GCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAG
* *
9248 AAG-TGTGAAAAGCCCG
318 ATGCT-TGAAAAGCCCT
* * * * ** *
9264 TCAATCTTTTAGGCGTTAAATTATATAT-TTTTTCTGTGTATTGTGG-CAGAAAATAAAGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCA-AAAATTGAG-GAAA
* * *
9327 AAATTTTCGGGTCA------G----TTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGG
64 AATTTTTCGGGTCATTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT-G
* * * * **
9382 GCAAAAAACGAGTTCCGGGG-CCCTGCCTCAGTTTTGCATGATTTTTGGCG-TGAAGACTCCTTG
128 GCTAAAAACGCGTTCCGGGGCCCCAG-CTCAGTTTTGCTTGATTTTTGGCGCCCAA-ACTCCTTG
* **** * * * *
9445 AGATGCCTATATTCATCGAACCAAAT-TCCAGCCAAATTCGATTTAACGA--TGTTTTTAACGAG
191 AAACATATATATTCATCTAACCAAATCT-CAGCCACATTGGATTTAAGGATTTGTTTTT-ACGAG
* * * *
9507 CATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAT-GGCAAAATGATATTAGA
254 CATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGA
* *
9571 AG-TGTGAAAAGCCCG
319 TGCT-TGAAAAGCCCT
* * *
9586 TCAATCTTTTGGGCGTT-AATTATATAT-TTTTTCTGAGTATGGTGGT-AGAAAATT
1 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCA-AAAATT
9640 CATAAAAAAA
Statistics
Matches: 4892, Mismatches: 662, Indels: 255
0.84 0.11 0.04
Matches are distributed among these distances:
318 1 0.00
319 251 0.05
320 29 0.01
321 39 0.01
322 218 0.04
323 127 0.03
324 228 0.05
328 60 0.01
329 299 0.06
330 254 0.05
331 596 0.12
332 945 0.19
333 433 0.09
334 669 0.14
335 398 0.08
336 72 0.01
337 100 0.02
338 105 0.02
339 50 0.01
340 18 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (333 bp):
TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGTATTGTGGTCAAAAATTGAGGAAAAA
TTTTTCGGGTCATTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCT
AAAAACGCGTTCCGGGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAACA
TATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGA
ATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTTGA
AAAGCCCT
Found at i:7017 original size:663 final size:660
Alignment explanation
Indices: 3632--9639 Score: 6002
Period size: 663 Copynumber: 9.1 Consensus size: 660
3622 AGGATTGATA
*
3632 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTAAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATAT-TTTTTATGAGAATTGTGGTCAAAAATTGAGGAAAAA
* * *
3697 TTTTTCGGGTCATTTTTTTGCAAACTTTTAGCCAAAATCGTGTACAACCATCACGATTTTT-GCC
65 TTTTTCGGGTCA-TTTTTTGCAAA-TTTTAGCCGAAATCGTG-ATAACCATCACGGTTTTTGGCC
* * * **
3761 TAAAAACGCGCTCCGGGGTCCGACTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAATT
127 -AAAAACGCGTTCCGGGGCCCAACTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAACA
* * ** * *
3826 TCTATATTCATCTAACCAAATCTCGGCCACATTGGATTTAATAATTTGTTTTTACGAGCATCTAA
191 TATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGA
* * * * *
3891 ATCATGTATCGATTTAATCAGAAATTAATTCAGAAAAAATAGGAAAAGCGATATTAGATGCTTGA
256 ATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAT-GGAAAAACGATATTAGATGCTCGA
* * * * *
3956 AAAGCCCTTCAATCTTTTTGGCGTTGAATTATATAT-TTTTTCTGAGTATTATGGCCAAAAACTG
320 AAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTG
* * * * *
4020 AGGAAAAACTTTTCGGGTCATTTTTTGCAAAATTTTAGCTGAAATTGTGTACTAACCATCACAGT
385 AGGAAAAATTTTTCGGGTCTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGT
** * * * * * *
4085 TTTTCCCTAAAAACGGGTTCGGGGGCCCCAGCTTAGTTTTGCTTGATTTTTGGCGCCCAGACTCC
450 TTTTGGCTAAAAACGCGTTC-CGGGACCCATCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCC
* * * * * *
4150 TTGATACATATATATGCATCTAACCAAATCTCAACAACGA-TGGATTTAGGGATTTGT-TTTTAC
514 TTGAAATATATATATTCATCTAACCAAATCTCAGCCAC-ATTGGATTTAAGGATTT-TATTTTAC
* * * * * * *
4213 GAGCATCTAAATCTTGTTTCCAATTAATTAGAAATTATTTCGGAAAAAAATGGAAAAAATGATAT
577 GAGCATCTTAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGCAAAAATGATAT
* ** * *
4278 TAGATGCGCGAAAAACCAT
642 TAGATACTTGAAAAGCCCT
* * * * *
4297 TCAAATCTTTTTGGTGATGAATTATATACTTTTTATGAGTATTGTGGTTAAAAATTGAGGAAAAA
1 TC-AATCTTTTTGGCGTTGAATTATATATTTTTTATGAGAATTGTGGTCAAAAATTGAGGAAAAA
* * *
4362 CTTTTCGGGTCATTTTTTGCAAATTTTTAGCCGAAATCGTGTAATAACCATCACGATTTTTGGCT
65 TTTTTCGGGTCATTTTTTGCAAA-TTTTAGCCGAAATCGTG--ATAACCATCACGGTTTTTGGCC
* * * * * *
4427 AAAAATGCGTTTCGGGGCCCCAGCTCAGTTTTCCTTGATTTATGGCGCCCAAACTCCTAGAAACA
127 AAAAACGCGTTCCGGGG-CCCAACTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAACA
* * **
4492 TATATATTCATCTAACCAAATCTCAACCACCTTAAATTTAAGGATTTGTTTTTACGAGCATTTGA
191 TATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGA
* *
4557 ATCTTGTTTCGATTTAATTGGAAATTAATTCAGGAAAAAAATTGGAAAAACGATATTAGGTGCTC
256 ATCTTGTTTCGATTTAATTAGAAATTAATTCA-G-AAAAAA-TGGAAAAACGATATTAGATGCTC
* * * * *
4622 GAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTAGGATAATTGTTGTCAAAAAC
318 GAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAAT
* * ** * *
4687 TGAGGAAAAATTTTTTGGATCTTTTTTTATAAAATTTTAGCCGAAATCATGTACTAACTATCACG
383 TGAGGAAAAATTTTTCGGGTCTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACG
*
4752 GTTTTTGGCTAAAAACGCGTTCCGGGACTCCATCTCAGTTTTGCTTGATTTTTGGAGCCCAAACT
448 GTTTTTGGCTAAAAACGCGTTCCGGGAC-CCATCTCAGTTTTGCTTGATTTTTGGCGCCCAAACT
* * * * * * *
4817 CCATGAAAAATATATATTCATTTAACCAAATCTAAGTCAC---GTATTTAAGGATTTTCTTTT-C
512 CCTTGAAATATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTTATTTTAC
* *
4878 GAGCAT-TTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGGAAAAAAAT-GCAAAAACGCT
577 GAGCATCTT-AATCTTGTTTCGATTTAATTAGAAATTAATTCA-GAAAAAAATAGCAAAAATGAT
* *
4941 ATTATATACTTGAAAATCCCT
640 ATTAGATACTTGAAAAGCCCT
*
4962 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTAGTCAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATAT-TTTTTATGAGAATTGTGGTCAAAAATTGAGGAAAAA
* * *
5027 TTTTTCGGGTAATTTTTTTGCAATTTTTTA-CCGAAATCGTGTAATAACCATAACGGTTTTTGGC
65 TTTTTCGGGTCA-TTTTTTGCAA-ATTTTAGCCGAAATCGTG--ATAACCATCACGGTTTTTGGC
* * * * * * * **
5091 TAAAAACGTGTTCCGGGGCCCGACTCAGTTTGGCTTGATTTTCGGCGCACAGACTCCTTGAAATT
126 CAAAAACGCGTTCCGGGGCCCAACTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAACA
* * * * ** * ** * *
5156 TCTATATTCATCGAACAAAATTTTGGCCACATTAGATTTAATAATTTGTTTTTATGAGCATCTGA
191 TATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGA
* * * * * *
5221 ATCATGTTTCGATTTCATCAGAAACTAATTCAGAAAAAATAGGAAAAAAGATATTAGATGCGCGA
256 ATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAT-GGAAAAACGATATTAGATGCTCGA
* * * * * ** *
5286 AAAGCCCTTCAATCTTTTTGTCATTGAATTACATATATATTAATGAGAATTAAGGTAAAAAATTG
320 AAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTG
** * *
5351 AGGAAAAATTTTTCGGGTCATTTTTTTGCAAAATTTTAGATGAAATTGTGTGCTAACCATCACGG
385 AGGAAAAATTTTTCGGGTC-TTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGG
* * * *
5416 TTTTTGGCTGAAAACGCGTTCCGGGGCCCGA-CTCAGTTTTGCTTGATTTTTAGCG-CCAGACTC
449 TTTTTGGCTAAAAACGCGTTCCGGGACCC-ATCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTC
* * * **
5479 CTTGAAATATCTATATTCATCTAACCAAATCTCGGCCACATTGGATTTGAGGATTCGATTTTACG
513 CTTGAAATATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTTATTTTACG
* * * * *
5544 AGCAT-TTGAATCATGTTTGGATTTAATCAGAAATTAATTCAGAAAAAAAATAGGAAAAGTGATA
578 AGCATCTT-AATCTTGTTTCGATTTAATTAGAAATTAATTCAG-AAAAAAATAGCAAAAATGATA
* *
5608 TTAGATGCTTGAAAAGCCTT
641 TTAGATACTTGAAAAGCCCT
* * ** *
5628 TCAATCTTTTTGGCGTTGAGTTACATATTTCATATGAGTATTTTGTGGTCAAAAATTGAGGAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAG-A-ATTGTGGTCAAAAATTGAGGAAAA
* * * * *
5693 ATTTTTCGGAT-GTTTTTTCGCAAAATTTTAGCCGAAATCATGTATTAACCATCATGGTTTTTGA
64 ATTTTTCGGGTCATTTTTT-GC-AAATTTTAGCCGAAATCGTG-A-TAACCATCACGGTTTTTGG
* * * * * * *
5757 CTAAAAACGCGTTCCGGGACTCCATCTCAGTTTAGCTTGATTTTTTGTGCCCAAACTCCTTGGAA
125 CCAAAAACGCGTTCCGGGGC-CCAACTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAA
** *
5822 CATATATATTCATCTAACCAAATCTCAGCCATGTTGTATTTAAGGATTT-TCTTTT-CGAGCATT
189 CATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGT-TTTTACGAGCATT
* * * *
5885 TGAATCTTGTTTCGATTCAATTAGAAATTAATTCAGAAAAAATGCAAAAACAATATTATATACTT
253 TGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATGGAAAAACGATA-T-TAGA--T
* * *
5950 GAAATTTGAAAATCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGT
314 G---CTCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGT
* * **
6015 CAAATA-TGAAGAAAAATTTTTCGGGTCATTTTTTTGCAAAATTTTAGATGAAATCGTGTACTAA
376 CAAAAATTGAGGAAAAATTTTTCGGGTC-TTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAA
* * * * * *
6079 CCATCACGATTTTTGGCTAAAAACGCGTTCCGGGAACAAACTCA-TTGTTGATTGATTTTTAGCG
440 CCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGACCCATCTCAGTT-TTGCTTGATTTTTGGCG
* * * *
6143 CCCAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCGGCCACATTGGATTTAAGGATTT
504 CCCAAACTCCTTGAAATATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTT
* * * * * *
6208 GATTTTAGGAGCATCTGAAT-TATGTTTGGATTTAATCAGAAATTAATTCAGAAAAAAATAGGAA
569 TATTTTACGAGCATCTTAATCT-TGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGCAA
** * *
6272 AAGCGATATTAGATGCTTGAAAAGCCTT
633 AAATGATATTAGATACTTGAAAAGCCCT
* * * ** * * **
6300 TCAATATTTTTGGCGTTGAGTTACATATTTCATATGAGTATTCTGGGAAAAAATTGAGGAAAAAT
1 TCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGAATTGTGGTCAAAAATTGAGGAAAAAT
*
6365 TTTTCGGGTCATTTTTTGC-ATTCTTTAGCCGAAATCGTG-TAACCATCACGGTTTTTGGCCAAA
66 TTTTCGGGTCATTTTTTGCAAAT-TTTAGCCGAAATCGTGATAACCATCACGGTTTTTGGCCAAA
* * * *
6428 AACGCGTTCCAGGGCCACAACTCAGTTTTGCTTGATTTTTGGCGCTCAAACCCCTTGAAAAATAT
130 AACGCGTTCCGGGGCC-CAACTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAACATAT
* * * *
6493 ATATTCATCTAACCAAATCTCAGCCACGTTGGACTTAAGGATTTGTTTATACGAGCATTTGAATT
194 ATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGAATC
*
6558 TTGTTTCGATTTAATTAGAAATTAATTCTGGAAAAAAATGGAAAAACGATATTAGATGCTCGAAA
259 TTGTTTCGATTTAATTAGAAATTAATTC-AG-AAAAAATGGAAAAACGATATTAGATGCTCGAAA
* * * *
6623 AG-CCTTCAATATTTTTGGAGCTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAC
322 AGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAG
* * * * * *
6687 GAAAAATCTTTTCGGATGTTTTTTTCGCAAAATTTTAGCCGAAATCATGTATTAACCACCATGGT
387 GAAAAAT-TTTTCGGGTCTTTTTTT-GCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGT
* *
6752 TTTTGTCTAAAAACGCGTTCCGGGACTCCATCTCA-TTTTAGCTTGATTTTTGGTGCCCAAACTC
450 TTTTGGCTAAAAACGCGTTCCGGGAC-CCATCTCAGTTTT-GCTTGATTTTTGGCGCCCAAACTC
* * * ** * *
6816 CTTGAAACATATATATTCATCTAACCAAAACCCAGCCATGTTGTATTTAAGGATTTTCTTTT-CG
513 CTTGAAATATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTTATTTTACG
6880 AGCATCTTAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAAT-GCAAAAATGATATT
578 AGCATCTTAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGCAAAAATGATATT
* *
6944 ATATACTTGAAAATCCCT
643 AGATACTTGAAAAGCCCT
*
6962 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTATGGTCAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATAT-TTTTTATGAGAATTGTGGTCAAAAATTGAGGAAAAA
* * * * *
7027 TTTTTCGGAT-GTTTTTTCGCAAAATTTTAGCCAAAATCATGTATTAACCATCACGGTTTTTGTC
65 TTTTTCGGGTCATTTTTT-GC-AAATTTTAGCCGAAATCGTG-A-TAACCATCACGGTTTTTGGC
* * * ** **
7091 CAAAAACGCGTTCCGGGACTCCATCTCAGTTTAGCTTGATTTTTGGTACCCAAACTCCTTGATGC
126 CAAAAACGCGTTCCGGGGC-CCAACTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAC
** *
7156 ATATATATTCATCTAACCAAATCTCAGCCATGTTGTATTTAAGGATTT-TCTTTT-CGAGCATTT
190 ATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGT-TTTTACGAGCATTT
* * * * *
7219 GAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATGCAAAAACGATTTTATATACTTG
254 GAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATGGAAAAACGATATTAGATGCTCG
* * * *
7284 AAAATCCCTTCAATATTTTTGGCGTTAAATTATATATATTTATATGAGAATTGTGGTCAAAAATT
319 AAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATT
* ** **
7349 GAGGAAAAATTTTTCGGGTCATTTTTTGCAAAATTTTAGATGAAAATCGTGTACTAAGAATCACG
384 GAGGAAAAATTTTTCGGGTCTTTTTTTGCAAAATTTTAGCCG-AAATCGTGTACTAACCATCACG
* * * *
7414 GTTTTTGGCTAAAAACGCGTTCCGGGGACCGA-CTCAGTTTTGCTTTATTTTTAGCGCCCAGACT
448 GTTTTTGGCTAAAAACGCGTTCC-GGGACCCATCTCAGTTTTGCTTGATTTTTGGCGCCCAAACT
* * *
7478 CCTTGAAATATCTATATTCATCTAACCAAATCTCGGCCACATTGGATTTAAGGATTTGATTTTAC
512 CCTTGAAATATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTTATTTTAC
* * * * *
7543 GAGCATCTGAATCATGTTT-GAATTTAATCAGAAATTAATTCAGAAAAATATAGGAAAAGA-GAT
577 GAGCATCTTAATCTTGTTTCG-ATTTAATTAGAAATTAATTCAGAAAAAAATAGCAAAA-ATGAT
* *
7606 ATTAGATGCTTGAAAAGCCTT
640 ATTAGATACTTGAAAAGCCCT
* * ** *
7627 TCAATCTTTTTGGCGTTGAGTTACATATTTCATATGAGTATTGTTGG-CAAAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGAATTG-TGGTCAAAAATTGAGGAAAAA
* *
7691 TTTTTCGGGTCATTTTTAGC-AATGTTTAGCCGAAATCGTGTACTAACCATGACGGTTTTTGGCC
65 TTTTTCGGGTCATTTTTTGCAAAT-TTTAGCCGAAATCGTG-A-TAACCATCACGGTTTTTGGCC
* * * * *
7755 AAAAACGCGTGCCGCGGCCCCAGCTCAGTTTTGCTTGATTTTTGGCGCTCAAACCCCTTGAAACA
127 AAAAACGCGTTCCG-GGGCCCAACTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAACA
* * *
7820 TATATATTCATCTAACCAAATCTCAGCCACGTTGGACTTAAGGATTTGTTTTTACGAGCATTTTA
191 TATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGA
* *
7885 ATCTTGTTTCGATTTAATTAGAATTTAATTCAG-GAAAATGGAAAAACGATATTAGATGCTCGAA
256 ATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATGGAAAAACGATATTAGATGCTCGAA
* * *
7949 AAGCCCTTCAATCTTTTTGGCGCTGAATTATATATATTTTTATGAGAATTGTAGTAAAAAATTGA
321 AAGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGA
* * * * * * * * * * *
8014 GGAAAAATTTTTCAGATGTTTTTTCGCAAAATTTTATCCAAAATCATATATTATA-TATCATGGT
386 GGAAAAATTTTTCGGGTCTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTA-ACCATCACGGT
* * *
8078 TTTTGTCTAAAAACGCGTTCCGGGACTCCATCTCAGTTTAGCTTGATTTTTGGTGCCCAAACTCC
450 TTTTGGCTAAAAACGCGTTCCGGGAC-CCATCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCC
* * ** * *
8143 TTGAAACATATATATTCATCTAACCAAAGCTCAGCCATGTTCTG-TTTAAGGATTTTCTTTT-CG
514 TTGAAATATATATATTCATCTAACCAAATCTCAGCCACATT-GGATTTAAGGATTTTATTTTACG
* *
8206 AGCAT-TTAAAATCTTGTTTCGATTTAATTAGAAATTAATTCATAAAAAAA-ATGCAAAAACGAT
578 AGCATCTT--AATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATA-GCAAAAATGAT
*
8269 ATTAGATACTTG-AAATCCCT
640 ATTAGATACTTGAAAAGCCCT
*
8289 TCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGCGGTC-AAAATTGAGGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATATAT-TTTTTATGAGAATTGTGGTCAAAAATTGAGGAAAAA
* ** * * *
8353 TTTTTCGGGTCATTTTTTTACAAAATTTTAGATGAAATTGTGTACTAACCACCACAGTTTTTGGG
65 TTTTTCGGGTCA-TTTTTTGC-AAATTTTAGCCGAAATCGTG-A-TAACCATCACGGTTTTT-GG
* * *** ** * **
8418 CAAAAAACGAGTTCTATGGCCCTGCCTCAGTTTTGCATGATTTTTGGCG-TGAAGACTCCTTGAA
125 CCAAAAACGCGTTCCGGGGCCC-AACTCAGTTTTGCTTGATTTTTGGCGCCCAA-ACTCCTTGAA
**** * * * * *
8482 ATGCCTATATTCATCGAACCAAAT-TCCAGCCAAATTCGATTTAACGATTT-TTTTAACGAGCAT
188 ACATATATATTCATCTAACCAAATCT-CAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT
* * * *
8545 CTGAATCTTGTTTCGATTTAATTAGAAA-TAACTTCAGAAAAAGAT-GCAAAATGATATTAAAAG
252 TTGAATCTTGTTTCGATTTAATTAGAAATTAA-TTCAGAAAAA-ATGGAAAAACGATATT-AGA-
* * * * *
8608 TG-T-GAAAAGCCCATCAATCTTTTAGGCGTTAAATTATATAT-TTTTTCTGAGTATTGTGG-CA
313 TGCTCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCA
* * * **
8669 GAAAA-TAAAGAAAAAATTTT-GGG--------T-C-AGTTTTTAGCCGAAATCGTGTACTAACC
378 -AAAATTGAGGAAAAATTTTTCGGGTCTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACC
* * * * *
8722 ATCACAGTTTTTGGGCAAAAAACGAGTTCCGGGGCCC-TGCCTCAGTTTTGCATGATTTTTGGCG
442 ATCACGGTTTTT-GGCTAAAAACGCGTTCCGGGACCCAT--CTCAGTTTTGCTTGATTTTTGGCG
** *** * * * *
8786 -TGAAGACTCCTTGAAATGCCTATATTCATCGAACCAAAT-TCCAGCCAAATTCGATTTAACGAT
504 CCCAA-ACTCCTTGAAATATATATATTCATCTAACCAAATCT-CAGCCACATTGGATTTAAGGAT
* * * *
8849 TTT-TTTAACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAT-GC-
567 TTTATTTTACGAGCATCTTAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGCA
* *
8911 AAAATGATATTAGA-AGTGTGAAAAGCCCA
632 AAAATGATATTAGATACT-TGAAAAGCCCT
* * * * *
8940 TCAATCTTTTGGGCGTTAAATTATACTATTTTTTATGAGTATTGTGGT-AGAAAATTCAGAAAAA
1 TCAATCTTTTTGGCGTTGAATTATA-TATTTTTTATGAGAATTGTGGTCA-AAAATTGAG-GAAA
* * *
9004 AATTTTCCGGGTCA------G---TTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTGTGG
63 AATTTTTCGGGTCATTTTTTGCAAATTTTAGCCGAAATCGTG-A-TAACCATCACGGTTTT-T-G
* * ** * * **
9060 GCAAAAAACGAGTTCCGGGGCCCTGCCTCAGTTTTGCATGATTTTTTGCG-TGAAGACTCCTTGA
124 GCCAAAAACGCGTTCCGGGGCCC-AACTCAGTTTTGCTTGATTTTTGGCGCCCAA-ACTCCTTGA
**** * * * * *
9124 AATGCCTATATTCATCGAACCAAAT-TCCAGCCAAATTCGATTTAACGATTT-TTTTAACGAGCA
187 AACATATATATTCATCTAACCAAATCT-CAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
* * * * * *
9187 TCTCAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAT-GCAAAATGATATTAGAAG
251 TTTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAG-AAAAAATGGAAAAACGATATTAG-A-
* * * * * *
9251 TG-T-GAAAAGCCCGTCAATCTTTTAGGCGTTAAATTATATAT-TTTTTCTGTGTATTGTGG-CA
313 TGCTCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCA
** * * **
9312 GAAAATAAAGAAAAAAAATTTTCGGG--------T-C-AGTTTTTAGCCGAAATCGTGTACTAAC
378 -AAAATTGAG-GAAAAATTTTTCGGGTCTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAAC
* * * * *
9367 CATCACAGTTTTTGGGCAAAAAACGAGTTCCGGGGCCC-TGCCTCAGTTTTGCATGATTTTTGGC
441 CATCACGGTTTTT-GGCTAAAAACGCGTTCCGGGACCCAT--CTCAGTTTTGCTTGATTTTTGGC
** * *** * * * *
9431 G-TGAAGACTCCTTGAGATGCCTATATTCATCGAACCAAAT-TCCAGCCAAATTCGATTTAACGA
503 GCCCAA-ACTCCTTGAAATATATATATTCATCTAACCAAATCT-CAGCCACATTGGATTTAAGGA
* * * * * *
9494 TGTT-TTTAACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-GGAAAAAATGGC
566 TTTTATTTTACGAGCATCTTAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGC
* *
9557 -AAAATGATATTAGA-AGTGTGAAAAGCCCG
631 AAAAATGATATTAGATACT-TGAAAAGCCCT
* * * *
9586 TCAATCTTTTGGGCGTT-AATTATATATTTTTTCTGAGTATGGTGGT-AGAAAATT
1 TCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGAATTGTGGTCA-AAAATT
9640 CATAAAAAAA
Statistics
Matches: 4579, Mismatches: 636, Indels: 277
0.83 0.12 0.05
Matches are distributed among these distances:
642 33 0.01
643 239 0.05
644 37 0.01
645 25 0.01
646 255 0.06
649 2 0.00
650 15 0.00
651 50 0.01
652 86 0.02
653 110 0.02
654 1 0.00
661 99 0.02
662 312 0.07
663 724 0.16
664 595 0.13
665 560 0.12
666 421 0.09
667 290 0.06
668 148 0.03
669 188 0.04
670 34 0.01
671 9 0.00
672 185 0.04
673 160 0.03
674 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (660 bp):
TCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGAATTGTGGTCAAAAATTGAGGAAAAAT
TTTTCGGGTCATTTTTTGCAAATTTTAGCCGAAATCGTGATAACCATCACGGTTTTTGGCCAAAA
ACGCGTTCCGGGGCCCAACTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAACATATAT
ATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGAATCTT
GTTTCGATTTAATTAGAAATTAATTCAGAAAAAATGGAAAAACGATATTAGATGCTCGAAAAGCC
CTTCAATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAGGAAA
AATTTTTCGGGTCTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
CTAAAAACGCGTTCCGGGACCCATCTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCTTGAAAT
ATATATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTTATTTTACGAGCATCTT
AATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATAGCAAAAATGATATTAGATACTT
GAAAAGCCCT
Found at i:10941 original size:329 final size:327
Alignment explanation
Indices: 9755--12149 Score: 2073
Period size: 328 Copynumber: 7.4 Consensus size: 327
9745 GTACTAACTA
* * * * * *
9755 TTAAAGATTTGTTTTTACGA-AATTCTAAATATTGTTTCGATTTAATTAAAAATAAATTCGGGAA
1 TTAAGGATTTGTTTTTACGAGCA-TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-GAAA
* * * *
9819 AAATGGGAAAAGGATATTAGAAGCGTGAAAACCCCTTCAATTTTTTTTGCGTTAAATTATATATT
64 AAATGGAAAAACGATATTAGAAGCGTGAAAA-CCCTTCAATTTTTTTGGCGTTGAATTATATATT
* * * * *
9884 TTTTCAAAGTATTGTGGCAAAGAATTAAGGAAAAAATTTTCGGATTAGTTTTTGCAAAATTTTAG
128 TTTTCTAAGTATTGTGGCAAAAAATT-TGGAAAAAATTTTCAGATCAGTTTTTGCAAAATTTTAG
* * * ** * *
9949 CCGAAATCGTTTACT---CATCACAGTTTAAGGCTAAAAACGCGTTCCGGGGTCCTGGCTCAGTT
192 TCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGG-CCCGGCTCAGTT
* * ** * ** * * *
10011 TTGCGTGATTTTTTGCGTAAAGACTCCTTGAAATATCTATATTCATCGAACCGTACCCCAGGCAC
256 TTGCATGATTTTTGGCAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCAC
*
10076 ATTCGAT
321 ATTGGAT
* * * * *
10083 TTGACGATTTGTTTTTACGAGCATCTGAATTTTGTTTCAATTTAATTAGAAATTAATTTCAGAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA-TAAATTC-G--A
** * * * * * *
10148 AAAAACAGAAAAATGGTATTATGAA-CGTTAAAAGCCCTTCAATCTTTTGGGGGTTGAATTATAT
62 AAAAATGGAAAAACGATATTA-GAAGCGTGAAAA-CCCTTCAATTTTTTTGGCGTTGAATTATAT
** * * * * * * *
10212 ATTTTTAATGAGTATTGTGGC-AAAAATTTCTGTAAAACTTTTC-GTGTAAGTTTTTAGCCAAA-
125 ATTTTTTCTAAGTATTGTGGCAAAAAATTT-GGAAAAAATTTTCAG-ATCAGTTTTT-GCAAAAT
* * * *
10274 ---A-TCG-AA-C----ACTAACCATCACGGTTTTTAGCTAAAAAGGCGTTCCGGGGCCACGACT
187 TTTAGTCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCC-CGGCT
* * * * *
10329 CAGTTTTGCATGGTTTTT-GTAATAAAGACTCCTTGAAATATCTATATTCAACTATCCAATTCTC
251 CAGTTTTGCATGATTTTTGGCAA-AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTC
* *
10393 ATCAACATTGGAT
315 AGCCACATTGGAT
* * **
10406 TTAAGGATTT-TTTTTACGAGCATCTAAATCTTATTTCGATTTAATTAGAAATAAATTCGGGAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAA
* * * * * **
10470 ATGGAAAGATGATAGTAGAAGCATAAAAAACATTTCAATTTTTTTTGGCGTTGAATTATAT-TTT
66 ATGGAAAAACGATATTAGAAGCGT-GAAAACCCTTCAA-TTTTTTTGGCGTTGAATTATATATTT
* * * * ** * * *
10534 TCTT-TTAGTATTGTGGTAAAAAATTGGGAAATACCTTTCAGGTTACTTTTTGCAAAATTTTAGT
129 T-TTCTAAGTATTGTGGCAAAAAATTTGGAAAAAATTTTCAGATCAGTTTTTGCAAAATTTTAGT
* * * * *
10598 CGAAATCATGTACTAAGCATCACGGTTTTTGGGTTAAAAGCGTGTTTCGGGGCCCGGCTCAGTTT
193 CGAAATCGTGTACTAACCATCACGGTTTTT-GGCTAAAAACGCGTTTCGGGGCCCGGCTCAGTTT
* * *
10663 TGCATTATTTTTGGCAAAAAGACTCCTTAAAATATCTATATTCATCGAACCAAATCTCAGCCACA
257 TGCATGATTTTTGGCAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACA
*
10728 TTGAAT
322 TTGGAT
* * * * *
10734 TTAAGGATTTATTTTTACGAGCACCTAAATCTTGTTTCGATCTAATTTGAAATAAATTCGAAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAA
*
10799 ATGGAAAAACAATATTAGAAGCGTGAAAACCCTTCAATTTTTTTGG-GTTGAATTATATATTTTT
66 ATGGAAAAACGATATTAGAAGCGTGAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATTTTT
* *
10863 TCAAAGTATTGTGGCAAAAAAATTGTGGAAAAAATTTTCAGATCAGTTTTTGCATAATTTTAGTC
131 TCTAAGTATTGTGGC-AAAAAATT-TGGAAAAAATTTTCAGATCAGTTTTTGCAAAATTTTAGTC
* * * * *
10928 GAAATCGTGTACTAACCATCACAGTTTTTTGCTAAAAACTCGTTCCGGGGTCCCTGCTCAGTTTT
194 GAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGG-CCCGGCTCAGTTTT
** * * *
10993 GCATGATTTTTGGCGTAAAGA-TACC-T---ATATC------CATCAAACCAAATCCCAGCCAAA
258 GCATGATTTTTGGCAAAAAGACT-CCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACA
*
11047 TTCGAT
322 TTGGAT
** * * * *
11053 TTAAAAATTGGTTTTTACGAGTATATGAATCTTGTTTCGATTTAATTAGAAATTAATTCGAAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAA
* * *
11118 TTGGAAAAACGATATTAGAAGCGTGAAAAGCCCATCAATCTTTTTGGCGTTGAATTATATAATTT
66 ATGGAAAAACGATATTAGAAGCGTGAAAA-CCCTTCAATTTTTTTGGCGTTGAATTATAT-ATTT
* * * ** * * **
11183 TTTCTCAGTCTTGTGGC-AAAAA-TT-CAAAAAA-----A-AAAAG----GGTAAGTTTTTAG-C
129 TTTCTAAGTATTGTGGCAAAAAATTTGGAAAAAATTTTCAGATCAGTTTTTGCAAAATTTTAGTC
* * * * *
11234 GAAATTTGTGTACCAACCATCACGGTTTTTAGCTAAAAACACGTTTCGGGGCCCCGGCTCATTTT
194 GAAA-TCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGG-CCCGGCTCAGTTT
* * *
11299 TGCATGAGTTTTGGCAAAAAAAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGGCAC
257 TGCATGATTTTTGGC-AAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCAC
11364 ATTGGAT
321 ATTGGAT
* *
11371 TTAAGGAGTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAAAAATAAATTCGCAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCG----A
* * * *
11436 AAAAATGGGAAAACGATATTAGAAGCGTGAAACACCCTTCAATATTTTTGGCCTTGAATCATATA
62 AAAAATGGAAAAACGATATTAGAAGCGTGAAA-ACCCTTCAATTTTTTTGGCGTTGAATTATATA
* * * *
11501 TTTTTTCTAAGTATTGTGG---AAAATTAAGGAAAAAAATTTCGGATCA-TCTTTTGCAAAAATT
126 TTTTTTCTAAGTATTGTGGCAAAAAATT-TGGAAAAAATTTTCAGATCAGT-TTTTGCAAAATTT
* * * * *
11562 TAGGCGAAATCGTTTACT---CATCACGGTTTATGGCTAAAAACGCGTTACAGGGCCCCGGCTCA
189 TAGTCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-GGGGCCCGGCTCA
* * ** * * * *
11624 ATTTTGCATGTTTTTTGGCGTAAAGACTCCTTGAAATATCTATATTTATCGAACCAAACCCCAGC
253 GTTTTGCATGATTTTTGGCAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
*
11689 CACATTCGAT
318 CACATTGGAT
* * * *
11699 TGAACGATTTGTTTTTACGAGCATCTGAATCTTGTTTCCATTTAATTAGAAATTAATTCAGAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-G-AAA
* * * * * * *
11764 AAATGGAAAAACGATATTATAAACATTAAAAGCCCTTCAATCTTTTTGCCTTTGAATTATATATT
64 AAATGGAAAAACGATATTAGAAGCGTGAAAA-CCCTTCAATTTTTTTGGCGTTGAATTATATATT
* * * ** * **
11829 TTTTATGAGTATTCTGGCAAAAAATTCAGAATAAACTTTTC-GTATCAGTTTTTAGCCGAA----
128 TTTTCTAAGTATTGTGGCAAAAAATTTGGAA-AAAATTTTCAG-ATCAGTTTTT-GCAAAATTTT
* ** * * **
11889 A-TC-AAA-----TATTAATTATCACGATTTTTGGCGAAAAACGCGTTTCGGGGCCACAACTCAG
190 AGTCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCC-CGGCTCAG
* * * * *
11947 TTTTGCATGGTTTTT-GCAATAAAGACTCCTTGAAATATCTATATTTATCTATCCAAATGTCATC
254 TTTTGCATGATTTTTGGCAA-AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGC
12011 CACATTGGAT
318 CACATTGGAT
* * * * *
12021 TTAAGGTTTTTTTTTTACGAGCATCTGAGTCTTGTTTCGATTTAATTAGAAATGAATTCGGAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAA
** *
12086 ATGGAAAAACGATATTAGAAGCGTGAAAAACATTTCAATTTTTTTGGCGTTGGATTATATATTT
66 ATGGAAAAACGATATTAGAAGCGTG-AAAACCCTTCAATTTTTTTGGCGTTGAATTATATATTT
12150 CACGATTTTC
Statistics
Matches: 1670, Mismatches: 306, Indels: 190
0.77 0.14 0.09
Matches are distributed among these distances:
306 5 0.00
307 73 0.04
308 6 0.00
309 2 0.00
311 3 0.00
312 6 0.00
317 14 0.01
318 132 0.08
319 145 0.09
320 78 0.05
321 49 0.03
322 267 0.16
323 101 0.06
324 5 0.00
325 9 0.01
326 89 0.05
327 24 0.01
328 278 0.17
329 260 0.16
330 32 0.02
331 70 0.04
332 17 0.01
333 5 0.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (327 bp):
TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAA
ATGGAAAAACGATATTAGAAGCGTGAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATTTTT
TCTAAGTATTGTGGCAAAAAATTTGGAAAAAATTTTCAGATCAGTTTTTGCAAAATTTTAGTCGA
AATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCGGCTCAGTTTTGCA
TGATTTTTGGCAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGG
AT
Found at i:17228 original size:2 final size:2
Alignment explanation
Indices: 17221--17250 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
17211 AACCCTGATT
17221 TA TA TA TA TA TA TA TA TA TA TA TA GTA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA T
17251 TTTAAAGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:44242 original size:39 final size:39
Alignment explanation
Indices: 44188--44266 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
44178 GGCAAGGTAT
44188 ATAAGCCCATAGAAATCCAGAATACAGTAGCTAAAGTTG
1 ATAAGCCCATAGAAATCCAGAATACAGTAGCTAAAGTTG
44227 ATAAGCCCATAGAAATCCAGAATACAGTAGCTAAAGTTG
1 ATAAGCCCATAGAAATCCAGAATACAGTAGCTAAAGTTG
44266 A
1 A
44267 ACAATGAGAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.20
Consensus pattern (39 bp):
ATAAGCCCATAGAAATCCAGAATACAGTAGCTAAAGTTG
Found at i:65612 original size:25 final size:25
Alignment explanation
Indices: 65584--65631 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
65574 GTATAATGTA
*
65584 AACATGGATGAACAATAAGGAAGTC
1 AACAGGGATGAACAATAAGGAAGTC
65609 AACAGGGATGAACAATAAGGAAG
1 AACAGGGATGAACAATAAGGAAG
65632 AATGTTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.50, C:0.10, G:0.27, T:0.12
Consensus pattern (25 bp):
AACAGGGATGAACAATAAGGAAGTC
Found at i:71924 original size:6 final size:6
Alignment explanation
Indices: 71913--71940 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
71903 CAATTATTCA
71913 ATTTTT ATTTTT ATTTTT ATTTTT ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTT
71941 GTGTGGTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
ATTTTT
Found at i:80243 original size:13 final size:13
Alignment explanation
Indices: 80225--80251 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80215 AGTATGATTT
80225 ACACAAAACCAGA
1 ACACAAAACCAGA
80238 ACACAAAACCAGA
1 ACACAAAACCAGA
80251 A
1 A
80252 AGAAAGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.30, G:0.07, T:0.00
Consensus pattern (13 bp):
ACACAAAACCAGA
Found at i:83401 original size:19 final size:19
Alignment explanation
Indices: 83379--83415 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
83369 GGTTTCTGTA
*
83379 ACTGTTTCATTACCGTTTG
1 ACTGTTTCATCACCGTTTG
83398 ACTGTTTCATCACCGTTT
1 ACTGTTTCATCACCGTTT
83416 TGGGACTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.24, G:0.14, T:0.46
Consensus pattern (19 bp):
ACTGTTTCATCACCGTTTG
Found at i:91387 original size:45 final size:45
Alignment explanation
Indices: 91319--91420 Score: 177
Period size: 45 Copynumber: 2.3 Consensus size: 45
91309 TTGTTCACTC
91319 GGCAATCATGGAGCCAAAACTCTCTTTGATCTCCTTAAAGCATTT
1 GGCAATCATGGAGCCAAAACTCTCTTTGATCTCCTTAAAGCATTT
* *
91364 GGCAATCATGGGGCCAAAGCTCTCTTTGATCTCCTTAAAGCATTT
1 GGCAATCATGGAGCCAAAACTCTCTTTGATCTCCTTAAAGCATTT
*
91409 GGCAGTCATGGA
1 GGCAATCATGGA
91421 TTCTAACTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (45 bp):
GGCAATCATGGAGCCAAAACTCTCTTTGATCTCCTTAAAGCATTT
Found at i:92392 original size:62 final size:62
Alignment explanation
Indices: 92321--92719 Score: 597
Period size: 62 Copynumber: 6.3 Consensus size: 62
92311 GTGTCTGTCC
*
92321 TCCTCTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTCCT
1 TCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCT
92383 TCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCT
1 TCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCT
*
92445 TCCACTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCT
1 TCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCT
*
92507 TCCCCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCT
1 TCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCT
*
92569 TCCTCTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGGCCTCTTCCCGT
1 TCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTT-CC-T
* *
92633 TTCTC-GTTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCTTCGCCTCCTGCGGAGG
1 TCCTCTG-T-CTT-CTC-G-----T-GT--ACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGG
92697 CCTCTTCCT
54 CCTCTTCCT
92706 TCC-C-GTCTTCTCGT
1 TCCTCTGTCTTCTCGT
92720 TCCTTCCTCT
Statistics
Matches: 314, Mismatches: 9, Indels: 27
0.90 0.03 0.08
Matches are distributed among these distances:
62 240 0.76
63 4 0.01
64 6 0.02
65 3 0.01
66 3 0.01
67 1 0.00
68 1 0.00
69 3 0.01
70 3 0.01
71 1 0.00
72 3 0.01
73 5 0.02
74 2 0.01
75 39 0.12
ACGTcount: A:0.03, C:0.40, G:0.22, T:0.35
Consensus pattern (62 bp):
TCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTCCT
Found at i:92724 original size:18 final size:20
Alignment explanation
Indices: 92701--92739 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
92691 CGGAGGCCTC
92701 TTCCTTCC-C-GTCTTCTCG
1 TTCCTTCCTCTGTCTTCTCG
92719 TTCCTTCCTCTGTCTTCTCG
1 TTCCTTCCTCTGTCTTCTCG
92739 T
1 T
92740 GTACCTTCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.42
19 1 0.05
20 10 0.53
ACGTcount: A:0.00, C:0.41, G:0.10, T:0.49
Consensus pattern (20 bp):
TTCCTTCCTCTGTCTTCTCG
Found at i:92781 original size:80 final size:80
Alignment explanation
Indices: 92564--92801 Score: 405
Period size: 80 Copynumber: 3.0 Consensus size: 80
92554 CGGAGGCCTC
*
92564 TTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGGAGG-C-C-T-
1 TTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTC
92625 CTTCCCGT-TTCTCG
66 CTTCCCGTCTTCTCG
*
92639 TTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCTTCGCCTCCTGCGGAGGCCTCTTC
1 TTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTC
92704 CTTCCCGTCTTCTCG
66 CTTCCCGTCTTCTCG
92719 TTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTC
1 TTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTC
92784 CTTCCCCTGTCTTCTCG
66 CTT-CCC-GTCTTCTCG
92801 T
1 T
92802 GTACCTTCGT
Statistics
Matches: 153, Mismatches: 3, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
75 56 0.37
76 1 0.01
77 1 0.01
78 1 0.01
79 8 0.05
80 73 0.48
81 3 0.02
82 10 0.07
ACGTcount: A:0.03, C:0.40, G:0.20, T:0.37
Consensus pattern (80 bp):
TTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCGGAGGCCTCTTC
CTTCCCGTCTTCTCG
Found at i:97173 original size:971 final size:969
Alignment explanation
Indices: 94501--97904 Score: 5099
Period size: 966 Copynumber: 3.5 Consensus size: 969
94491 GATCTGATAA
* * * ** * *
94501 AATATAGATATTTCAAGGAGTTTTGGCGTAAAAAATCATGCAAAATTGAGTTGGGACCATGGAAC
1 AATATAGATATTTCAAGGAGTGTTGGCGCAAAAAATCATGCAAAACTGAGCCGGGACCCTAGAAC
* * * *
94566 ACGTTTTTAGCCAAAAACTGTGATGGTCATTACACGATTTTGGTTAAAA-TTTTAAATAA-GTAA
66 ACGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTTGGTTAAAATTTTTAAAAAATG-AC
* ** * *
94629 CA-AATAATTTTTCCAT-AATTTTTAGCCATAATACTCGTAAAAATTATATAACTCAACGCCAAA
130 CAGAAAAATTTTTCC-TCAATTTTTAGCCATAATACTAATAAAAATCATATAACTCAACGCAAAA
* *
94692 AAGATTGAATGAC-TTTCACGCTTCTAATATCGTTTTTCCTATTGTTTTTTCTGTATGAATTTCT
194 AAGATTGAATG-CTTTTCATGCTTCTAATATCGTTTTTCCTATTGTTTTTTCTGTATTAATTTCT
* *
94756 AATTAAATCGAAACAACATTTAGATGCTCAT-AAAAGCAAATCCTTAAATCCAATTTGGCTGAC-
258 AATTAAATCGAAACAACATTTAGATGCTCGTAAAAAG-AAATCCTTAAATTCAATTTGGCTG-CG
* * *
94819 ATTT-GTTAGACGAATATAGATATTTCAAGGAGTCTTGATACCAAAAATCATGCAAAACGGAGTC
321 ATTTGGTTAGACGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAGCC
* * * * *
94883 GGGGCCCCAGAACGCGTTTTTAGCAAAAAACCGCGACGGTTAGTACACAATTTCGGCTAAAATTG
386 GGGGCCCCGGAACGCGTTTTTAGCCAAAAACTGTGAC-G---GTACACGATTTCGGCTAAAATTG
** * *
94948 ACCCGAAAAGTTTTCCCCTCAATTTTTA--CAAAATACTCATAAAAATATATAATTCAATGCCAA
447 ACCCGAAATTTTTTCCACTCAATTTTTAGCCAAAATACTCATAAAAATA-ATAATTAAATGCCAA
* * * ** *
95011 AATGATTGAATGGCTTTTCACGCTTATAATATCGTTTTTCCTATTTTTTTTCTAAATTAATTTCT
511 AAAGATTGAAGGGCTTTTCACGCTTCTAATATCAATTTTCCTATTTTTTTTCTAAATTAATTTTT
* * * * ** *
95076 AATTAAATCGAAATAGGATTGAGATGCTCGTAAAAACAAATTTTTAAATCCAACGTGGCTGAGAT
576 TATTAAATCGAAACACGATTGAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGAT
* * * *
95141 TTGGTTAGATAAATATAGATATTTCAAGGAGTCTTGGCCTAAAAAATCATCCAAAACTGAGCTGA
641 TTGGTTAGATGAATATAGATATTTCAAGGAGTATTGACCCAAAAAATCATCCAAAACTGAGCTGA
* * * *
95206 GGCCCCGGAACGCGTTTTTAGCCAAAAACTGTAATGGTTTAT-TACAAGATTTCGGCTAAAACTG
706 GGCCCCAGAACGCGTTTTAAGCCAAAAACTGTGATGGTTT-TGTACAAGATTTCGGCTAAAATTG
* * * *
95270 ACCCCAAATTTTTTTCCTCAATTTGTGTCCAAAATACTC--ATAAATATATAATTCAACGCTAAA
770 GCCCGAAATTTTTTCCCTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAA
* * *
95333 AAGACTGAAGGGCTTTTCACGCTTCTAATATTG-TTTTCCTATTTTTTCTGAATTAATTTTTAAT
835 AAGACTGAAGGGCTTTTCACACTTCTAATATCGTTTTTCCTA-TTTTT-T-AATTAATTTCTAAT
* * * * *
95397 TAAATCGAAACAAGATTCAAAGGCTCGTAAAAACAATTCCTTAAATCCCATGTGGCTGAGACATG
897 TAAATCGAAACAAGATTCAGATGCTCGTAAAAACAATTCCTTAAACCCCATTTGGCTGAGACTTG
95462 GTTAGATG
962 GTTAGATG
* * * * *
95470 AATATAGATAATTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGACCTTGGAAC
1 AATATAGATATTTCAAGGAGTGTTGGCGCAAAAAATCATGCAAAACTGAGCCGGGACCCTAGAAC
* * **
95535 GCGTTTTTAGCCAAAAACAGTGATGGTTATTACACGATTTTGGTTAAAATTTAAAAAAAAATGAC
66 ACGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTTGGTTAAAATTT-TTAAAAAATGAC
* * * * *
95600 CAGAAAATTTTTTCCTCAATTTTTAGGCATAATACTCATAAAAATTATATAACTCAATGCAAAAA
130 CAGAAAAATTTTTCCTCAATTTTTAGCCATAATACTAATAAAAATCATATAACTCAACGCAAAAA
*
95665 AAATTGAATGGCTTTTCATGCTTCTAATATCGTTTTTCCTATTGTTTTTTC-GTTATTAATTTCT
195 AGATTGAAT-GCTTTTCATGCTTCTAATATCGTTTTTCCTATTGTTTTTTCTG-TATTAATTTCT
* * * * *
95729 AATTAAATCGGAAACAACATTTCGATGCACGTAAAAACAAATCCTTAAATTTAATTTGGCTGAGA
258 AATTAAATC-GAAACAACATTTAGATGCTCGTAAAAAGAAATCCTTAAATTCAATTTGGCTGCGA
** ** * **
95794 TTTGAATAGAAAAATATAGGTATTTCAAGGAGTCTTGACACCAAAAATCATGCAAATTTGAGCCG
322 TTTGGTTAGACGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAGCCG
* * * * *
95859 GAGCACCGAAACACGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGA
387 GGGCCCCGGAACGCGTTTTTAGCCAAAAACTGTGA-CG---GTACACGATTTCGGCTAAAATTGA
*
95924 CCAGAAATTTTTTCCACTCAATTTTTAGCCAAAATACTCATAAAAATAAATAATTAAATGCCAAA
448 CCCGAAATTTTTTCCACTCAATTTTTAGCCAAAATACTCATAAAAAT-AATAATTAAATGCCAAA
* * * * *
95989 AAGATTGAAGGGTTTTTCATGCTTCTAATATCAATTTTTCTATCTTTTTTCAAAATTAATTTTTT
512 AAGATTGAAGGGCTTTTCACGCTTCTAATATCAATTTTCCTATTTTTTTTCTAAATTAATTTTTT
96054 ATTAAATCGAAACACGATTGAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATT
577 ATTAAATCGAAACACGATTGAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATT
*
96119 TGGTTAGATGAATATAGATATTTCAAGGACTATTGACCCAAAAAATCATCCAAAACTGAGCTGAG
642 TGGTTAGATGAATATAGATATTTCAAGGAGTATTGACCCAAAAAATCATCCAAAACTGAGCTGAG
* *
96184 GCCCCAGAACGCGTTTTAAGCCAAAAACTGTGATGGTTTTGTACACGATTTCAGCTAAAATTGGC
707 GCCCCAGAACGCGTTTTAAGCCAAAAACTGTGATGGTTTTGTACAAGATTTCGGCTAAAATTGGC
96249 CCGAAATTTTTTCCCCTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAA
772 CCGAAATTTTTT-CCCTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAA
96314 AGACTGAAGGGCTTTTCACACTTCTAATATCGTTTTTCCTATTTATTTAAAATTAATTTCTAATT
836 AGACTGAAGGGCTTTTCACACTTCTAATATCGTTTTTCCTATTT-TTT--AATTAATTTCTAATT
96379 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAATTCCTTAAACCCCATTTGGCTGAGACTTGG
898 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAATTCCTTAAACCCCATTTGGCTGAGACTTGG
*
96444 TTAGAAG
963 TTAGATG
*
96451 AATATAGATATTTCAAGGAGTGTTAGCGCAAAAAATCATGCAAAACTGAGCCGGGACCCTAGAAC
1 AATATAGATATTTCAAGGAGTGTTGGCGCAAAAAATCATGCAAAACTGAGCCGGGACCCTAGAAC
*
96516 GCGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTTGGTTAAAATTTTTAAAAAATGACC
66 ACGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTTGGTTAAAATTTTTAAAAAATGACC
* *
96581 AGAAAAATTTTTCCTCAATTTTTAGCCACAATATTAATAAAAATCATATAACTCAACGCAAAAAA
131 AGAAAAATTTTTCCTCAATTTTTAGCCATAATACTAATAAAAATCATATAACTCAACGCAAAAAA
* *
96646 GATTGAATGCTTTTCATGCTTCTAATTTTGTTTTTCCTATTGTTTTTTCTGTATTAATTTCTAAT
196 GATTGAATGCTTTTCATGCTTCTAATATCGTTTTTCCTATTGTTTTTTCTGTATTAATTTCTAAT
*
96711 TAAATCGAAACAACATTTAGATGCTCGTAAAAAGAAATTCTTAAATTCAATTTGGCTGCGATTTG
261 TAAATCGAAACAACATTTAGATGCTCGTAAAAAGAAATCCTTAAATTCAATTTGGCTGCGATTTG
* *
96776 GTTAGACGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGC
326 GTTAGACGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAGCCGGGGC
*
96841 CCCGGAACGCGTTTTTAGCCAAAAACTGTGAC-G-ACACGATTTCGGGTAAAATTGACCCGAAAT
391 CCCGGAACGCGTTTTTAGCCAAAAACTGTGACGGTACACGATTTCGGCTAAAATTGACCCGAAAT
*
96904 TTTTTCCACTCAATTTTTAGCCAAAATACTCATAAAAATAAGTAATT-AATTCCAAAAAGATTGA
456 TTTTTCCACTCAATTTTTAGCCAAAATACTCATAAAAATAA-TAATTAAATGCCAAAAAGATTGA
* *
96968 AGGGCTTTTCACGCTTCTAATATCAATTTTGCTATTTTTTTTCTAAATTAATTTTTTATTAATTC
520 AGGGCTTTTCACGCTTCTAATATCAATTTTCCTATTTTTTTTCTAAATTAATTTTTTATTAAATC
*
97033 GAAACACGATTGAGATACTCGTAAAAACAAATCGTTAAATCCAATGTGGCTGAGATTTGGTTAGA
585 GAAACACGATTGAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGA
*
97098 TGAATATAGATATTTCAAGGAGTATTGACCCAAAAAATCATCCAAAATTGAGCTGAGGCCCCAGA
650 TGAATATAGATATTTCAAGGAGTATTGACCCAAAAAATCATCCAAAACTGAGCTGAGGCCCCAGA
*
97163 ACGCGTTTTAAGCCAAAAACTGTGATGG-TTTGTACATGATTTCGGCTAAAATTGGCCCGAAATT
715 ACGCGTTTTAAGCCAAAAACTGTGATGGTTTTGTACAAGATTTCGGCTAAAATTGGCCCGAAA-T
*
97227 TTTTTCCCTCAATTTGTGGCCAAAATACTCATATAAATATATATTTCAACGCTAAAAAGACTGAA
779 TTTTTCCCTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAAAGACTGAA
*
97292 GGGCTTTTCACACTTCTAATATCATTTTT-CTATTTTTTAATTAATTTCTAATTAAATCGAAACA
844 GGGCTTTTCACACTTCTAATATCGTTTTTCCTATTTTTTAATTAATTTCTAATTAAATCGAAACA
97356 AGATTCAGATGCTCGTAAAAACAATTCCTTAAACCCCATTTGGCTGAGACTTGGTTAGATG
909 AGATTCAGATGCTCGTAAAAACAATTCCTTAAACCCCATTTGGCTGAGACTTGGTTAGATG
**
97417 AATATAGATATTTCAAGGAGTGTTGGCGCCGAAAATCATGCAAAACTGAGCCGGGACCCTAGAAC
1 AATATAGATATTTCAAGGAGTGTTGGCGCAAAAAATCATGCAAAACTGAGCCGGGACCCTAGAAC
97482 ACGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTTGGTTAAAATTTTT-AAAAATAGAC
66 ACGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTTGGTTAAAATTTTTAAAAAAT-GAC
* * *
97546 CAGAAAAAGTTTTCCTCAATTTTTAGCCAAAATATTAATAAAAATCATATAACTCAACGCAAAAA
130 CAGAAAAATTTTTCCTCAATTTTTAGCCATAATACTAATAAAAATCATATAACTCAACGCAAAAA
* *
97611 AGATTGAATGCTTTTCATGCTTCTAATTTTG-TTTTCCTATTGTTTTTTCTGTATTAATTTCTAA
195 AGATTGAATGCTTTTCATGCTTCTAATATCGTTTTTCCTATTGTTTTTTCTGTATTAATTTCTAA
97675 TTAAATCGAAACAACATTTAGATGCTCGTAAAAAGAAATCCTTAAATTCAATTTGGCTGCGATTT
260 TTAAATCGAAACAACATTTAGATGCTCGTAAAAAGAAATCCTTAAATTCAATTTGGCTGCGATTT
* *
97740 GGTTAGACGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAGTCATGCAAAACTGAGCCGGGG
325 GGTTAGACGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAGCCGGGG
* *
97805 CCCCGGAACGCGTTTTTAGCTAAAAACTGTGACGGTTAGTACACGATTTCGGGTAAAATTGACCC
390 CCCCGGAACGCGTTTTTAGCCAAAAACTGTGAC-G---GTACACGATTTCGGCTAAAATTGACCC
*
97870 GAAATTTTTTCC-CTCAATTTTGTGGCCAAAATACT
451 GAAATTTTTTCCACTCAATTTT-TAGCCAAAATACT
97905 TATATAA
Statistics
Matches: 2235, Mismatches: 166, Indels: 66
0.91 0.07 0.03
Matches are distributed among these distances:
965 198 0.09
966 298 0.13
968 3 0.00
969 109 0.05
970 131 0.06
971 296 0.13
972 137 0.06
973 58 0.03
974 45 0.02
975 132 0.06
976 1 0.00
977 272 0.12
978 160 0.07
979 59 0.03
980 136 0.06
981 200 0.09
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (969 bp):
AATATAGATATTTCAAGGAGTGTTGGCGCAAAAAATCATGCAAAACTGAGCCGGGACCCTAGAAC
ACGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTTGGTTAAAATTTTTAAAAAATGACC
AGAAAAATTTTTCCTCAATTTTTAGCCATAATACTAATAAAAATCATATAACTCAACGCAAAAAA
GATTGAATGCTTTTCATGCTTCTAATATCGTTTTTCCTATTGTTTTTTCTGTATTAATTTCTAAT
TAAATCGAAACAACATTTAGATGCTCGTAAAAAGAAATCCTTAAATTCAATTTGGCTGCGATTTG
GTTAGACGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAGCCGGGGC
CCCGGAACGCGTTTTTAGCCAAAAACTGTGACGGTACACGATTTCGGCTAAAATTGACCCGAAAT
TTTTTCCACTCAATTTTTAGCCAAAATACTCATAAAAATAATAATTAAATGCCAAAAAGATTGAA
GGGCTTTTCACGCTTCTAATATCAATTTTCCTATTTTTTTTCTAAATTAATTTTTTATTAAATCG
AAACACGATTGAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGAT
GAATATAGATATTTCAAGGAGTATTGACCCAAAAAATCATCCAAAACTGAGCTGAGGCCCCAGAA
CGCGTTTTAAGCCAAAAACTGTGATGGTTTTGTACAAGATTTCGGCTAAAATTGGCCCGAAATTT
TTTCCCTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAAAGACTGAAGG
GCTTTTCACACTTCTAATATCGTTTTTCCTATTTTTTAATTAATTTCTAATTAAATCGAAACAAG
ATTCAGATGCTCGTAAAAACAATTCCTTAAACCCCATTTGGCTGAGACTTGGTTAGATG
Found at i:97626 original size:649 final size:639
Alignment explanation
Indices: 94501--97911 Score: 3444
Period size: 649 Copynumber: 5.3 Consensus size: 639
94491 GATCTGATAA
* * ** * ** *
94501 AATATAGATATTTCAAGGAGTTTTGGCGTAAAAAATCATGCAAAATTGAGTTGGG-ACCATGGAA
1 AATATAGATATTTCAAGGAGTCTTGACCCAAAAAATCATGCAAAACTGAGCCGGGCCCCA--GAA
* * * * * ***
94565 CACGTTTTTAGCCAAAAACTGTGATGGTCAT-TACACGATTTTGGTTAAAATTTTAAATAAGTAA
64 CGCGTTTTTAGCCAAAAACTGTGATGGT-TTGTACACGATTTCGGCTAAAA--TT-GACCCG---
* * * * * * * *
94629 CAAATAATTTTTCCAT-AATTTTTAGCCATAATACTCGTAAAAATTATATAACTCAACGCCAAAA
122 -AAAT--TTTTTCCCTCAATTTGTGGCCAAAATACTCATATAAA-TATATAATTCAACGCTAAAA
* * * * ** *
94693 AGATTGAATGAC-TTTCACGCTTCTAATATCGTTTTTCCTATTGTTTTTTCTGTATGAATTTCTA
183 AGACTGAAGGGCTTTTCACGCTTCTAATATCATTTTT-CTA---TTTTTTCTAAATTAATTTCTA
* * * * * *
94757 ATTAAATCGAAACAACATTTAGATGCTCATAAAAGCAAATCCTTAAATCCAATTTGGCTGACA-T
244 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAATTCCTTAAATCCAATTTGGCTGAGACT
* * ** * *
94821 TTGTTAGACGAATATAGATATTTCAAGGAGTCTTGATACCAAAAATCATGCAAAACGGAGTCGGG
309 TGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGG
* * * * * *
94886 GCCCCAGAACGCGTTTTTAGCAAAAAACCGCGACGGTTAGTACACAATTTCGGCTAAAATTGACC
374 ACCCCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTCGGCTAAAATTGACC
* * * * *
94951 CGAAAAGTTTTCCCCTCAATTTTTA--CAAAATACTCATAAAAATATATAATTCAATGCCAAAAT
439 CG-AAATTTTTTCCCTCAATTTTTAGCCAAAATACTCATAAAAATATATAACTCAATGCAAAAAA
*
95014 GATTGAATGGCTTTTCACGCTTATAATATCGTTTTTCCTATTTTTTTTCTAAATTAATTTCTAAT
503 GATTGAAT-GCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTTCTAAATTAATTTCTAAT
* * ** **
95079 TAAATCGAAATAGGATTGAGATGCTCGTAAAAACAAATTTTTAAATCCAACGTGGCTGAGATTTG
567 TAAATCGAAACACGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATTTGGCTGAGATTTG
95144 GTTAGATA-
632 GTTAGA-AG
* * * * *
95152 AATATAGATATTTCAAGGAGTCTTGGCCTAAAAAATCATCCAAAACTGAGCTGAGGCCCCGGAAC
1 AATATAGATATTTCAAGGAGTCTTGACCCAAAAAATCATGCAAAACTGAGCCG-GGCCCCAGAAC
* * * * *
95217 GCGTTTTTAGCCAAAAACTGTAATGGTTTATTACAAGATTTCGGCTAAAACTGACCCCAAATTTT
65 GCGTTTTTAGCCAAAAACTGTGATGGTTT-GTACACGATTTCGGCTAAAATTGACCCGAAATTTT
* *
95282 TTTCCTCAATTTGTGTCCAAAATACTC--ATAAATATATAATTCAACGCTAAAAAGACTGAAGGG
129 TTCCCTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAAAGACTGAAGGG
** * * *
95345 CTTTTCACGCTTCTAATATTGTTTTCCTATTTTTTCTGAATTAATTTTTAATTAAATCGAAACAA
194 CTTTTCACGCTTCTAATATCATTTTTCTATTTTTTCTAAATTAATTTCTAATTAAATCGAAACAA
* * * * *
95410 GATTCAAAGGCTCGTAAAAACAATTCCTTAAATCCCATGTGGCTGAGACATGGTTAGATGAATAT
259 GATTCAGATGCTCGTAAAAACAATTCCTTAAATCCAATTTGGCTGAGACTTGGTTAGATGAATAT
* * ***
95475 AGATAATTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGACCTTGGAACGCGTT
324 AGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGACCCCAGAACGCGTT
* * * *
95540 TTTAGCCAAAAACAGTGATGGTTATTACACGATTTTGGTTAAAATTTAAAAAAAAATGACCAGAA
389 TTTAGCCAAAAACCGTGATGGTTATTACACGATTTCGGCTAAAA--T---------TGACCCG-A
* * *
95605 AATTTTTT-CCTCAATTTTTAGGCATAATACTCATAAAAATTATATAACTCAATGCAAAAAAAAT
442 AATTTTTTCCCTCAATTTTTAGCCAAAATACTCATAAAAA-TATATAACTCAATGCAAAAAAGAT
* *
95669 TGAATGGCTTTTCATGCTTCTAATATCGTTTTTCCTATTGTTTTTTCGT-TATTAATTTCTAATT
506 TGAAT-GCTTTTCACGCTTCTAATATCGTTTTTCCTATT-TTTTTTC-TAAATTAATTTCTAATT
** * **
95733 AAATCGGAAACAAC-ATTTCGATGCACGTAAAAACAAATCCTTAAATTTAATTTGGCTGAGATTT
568 AAATC-GAAAC-ACGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATTTGGCTGAGATTT
** *
95797 GAATAGAAA
631 GGTTAGAAG
* ** *
95806 AATATAGGTATTTCAAGGAGTCTTGACACC-AAAAATCATGCAAATTTGAGCCGGAGCACC-GAA
1 AATATAGATATTTCAAGGAGTCTTGAC-CCAAAAAATCATGCAAAACTGAGCCGG-GCCCCAG-A
* * *
95869 ACACGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTGACCAGAAATTT
63 ACGCGTTTTTAGCCAAAAACTGTGATGGTTTGTACACGATTTCGGCTAAAATTGACCCGAAATTT
* * * * * * * *
95934 TTTCCACTCAATTTTTAGCCAAAATACTCATAAAAATAAATAATTAAATGCCAAAAAGATTGAAG
128 TTTCC-CTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAAAGACTGAAG
* * * * *
95999 GGTTTTTCATGCTTCTAATATCAATTTTTCTATCTTTTTTCAAAATTAATTTTTTATTAAATCGA
192 GGCTTTTCACGCTTCTAATATC-ATTTTTCTA--TTTTTTCTAAATTAATTTCTAATTAAATCGA
* * * * * *
96064 AACACGATTGAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
254 AACAAGATTCAGATGCTCGTAAAAACAATTCCTTAAATCCAATTTGGCTGAGACTTGGTTAGATG
* * * * *
96129 AATATAGATATTTCAAGGACTATTGAC-CCAAAAAATCATCCAAAACTGAGCTGAGG-CCCCAGA
319 AATATAGATATTTCAAGGAGTCTTGGCACC-AAAAATCATGCAAAACTGAGCCG-GGACCCCAGA
* * * * *
96192 ACGCGTTTTAAGCCAAAAACTGTGATGGTTTTGTACACGATTTCAGCTAAAATTGGCCCGAAATT
382 ACGCGTTTTTAGCCAAAAACCGTGATGGTTAT-TACACGATTTCGGCTAAAATTGACCCGAAATT
* * * * * * *
96257 TTTTCCCCTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAAAGACTGAA
446 TTTT-CCCTCAATTTTTAGCCAAAATACTCATAAAAATATATAACTCAATGCAAAAAAGATTGAA
* * * *
96322 GGGCTTTTCACACTTCTAATATCGTTTTTCCTA-TTTATTT-AAAATTAATTTCTAATTAAATCG
510 -TGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTTCTAAATTAATTTCTAATTAAATCG
* * * * * *
96385 AAACAAGATTCAGATGCTCGTAAAAACAATTCCTTAAACCCCATTTGGCTGAGACTTGGTTAGAA
574 AAACACGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGAA
96450 G
639 G
* * *
96451 AATATAGATATTTCAAGGAGTGTT-AGCGCAAAAAATCATGCAAAACTGAGCCGGGACCCTAGAA
1 AATATAGATATTTCAAGGAGTCTTGA-CCCAAAAAATCATGCAAAACTGAGCCGGG-CCCCAGAA
* * *
96515 CGCGTTTTTAGCCAAAAACCGTGATGGTTAT-TACACGATTTTGGTTAAAATTTTTAAAAAATGA
64 CGCGTTTTTAGCCAAAAACTGTGATGGTT-TGTACACGATTTCGGCTAAAA----T------TGA
* * * * * * * * * *
96579 CCAGAAAAATTTTT-CCTCAATTTTTAGCCACAATATTAATAAAAATCATATAACTCAACGCAAA
118 CCCG-AAATTTTTTCCCTCAATTTGTGGCCAAAATACTCATATAAAT-ATATAATTCAACGCTAA
* * * * ** **
96643 AAAGATTGAA-TGCTTTTCATGCTTCTAATTTTGTTTTTCCTATTGTTTTTTCTGTATTAATTTC
181 AAAGACTGAAGGGCTTTTCACGCTTCTAATATCATTTTT-CTA---TTTTTTCTAAATTAATTTC
* * * * *
96707 TAATTAAATCGAAACAACATTTAGATGCTCGTAAAAAGAAATT-CTTAAATTCAATTTGGCTGCG
242 TAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA-CAATTCCTTAAATCCAATTTGGCTGAG
* * *
96771 ATTTGGTTAGACGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCATGCAAAACTGAGCC
306 ACTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCC
* * ** *
96836 GGGGCCCCGGAACGCGTTTTTAGCCAAAAA-C-TG-T-G--ACGACACGATTTCGGGTAAAATTG
371 GGGACCCCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTTATTACACGATTTCGGCTAAAATTG
* * *
96895 ACCCGAAATTTTTTCCACTCAATTTTTAGCCAAAATACTCATAAAAATA-AGTAA-TTAATTCCA
436 ACCCGAAATTTTTTCC-CTCAATTTTTAGCCAAAATACTCATAAAAATATA-TAACTCAATGCAA
* ** * *
96958 AAAAGATTGAAGGGCTTTTCACGCTTCTAATATCAATTTTGCTATTTTTTTTCTAAATTAATTTT
499 AAAAGATTGAA-TGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTTCTAAATTAATTTC
* * * * *
97023 TTATTAATTCGAAACACGATTGAGATACTCGTAAAAACAAATCGTTAAATCCAATGTGGCTGAGA
563 TAATTAAATCGAAACACGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATTTGGCTGAGA
*
97088 TTTGGTTAGATG
628 TTTGGTTAGAAG
* * * *
97100 AATATAGATATTTCAAGGAGTATTGACCCAAAAAATCATCCAAAATTGAGCTGAGGCCCCAGAAC
1 AATATAGATATTTCAAGGAGTCTTGACCCAAAAAATCATGCAAAACTGAGCCG-GGCCCCAGAAC
* * *
97165 GCGTTTTAAGCCAAAAACTGTGATGGTTTGTACATGATTTCGGCTAAAATTGGCCCGAAATTTTT
65 GCGTTTTTAGCCAAAAACTGTGATGGTTTGTACACGATTTCGGCTAAAATTGACCCGAAA-TTTT
*
97230 TTCCCTCAATTTGTGGCCAAAATACTCATATAAATATATATTTCAACGCTAAAAAGACTGAAGGG
129 TTCCCTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAAAGACTGAAGGG
*
97295 CTTTTCACACTTCTAATATCATTTTTCTA-TTTTT-T-AATTAATTTCTAATTAAATCGAAACAA
194 CTTTTCACGCTTCTAATATCATTTTTCTATTTTTTCTAAATTAATTTCTAATTAAATCGAAACAA
* *
97357 GATTCAGATGCTCGTAAAAACAATTCCTTAAACCCCATTTGGCTGAGACTTGGTTAGATGAATAT
259 GATTCAGATGCTCGTAAAAACAATTCCTTAAATCCAATTTGGCTGAGACTTGGTTAGATGAATAT
* * * * *
97422 AGATATTTCAAGGAGTGTTGGCGCCGAAAATCATGCAAAACTGAGCCGGGACCCTAGAACACGTT
324 AGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGACCCCAGAACGCGTT
* * *
97487 TTTAGCCAAAAACCGTGATGGTTATTACACGATTTTGGTTAAAATTTTTAAAAATAGACCAGAAA
389 TTTAGCCAAAAACCGTGATGGTTATTACACGATTTCGGCTAAAA----T-----T-GACCCG-AA
** * * *
97552 AAGTTTT-CCTCAATTTTTAGCCAAAATATTAATAAAAATCATATAACTCAACGCAAAAAAGATT
443 ATTTTTTCCCTCAATTTTTAGCCAAAATACTCATAAAAAT-ATATAACTCAATGCAAAAAAGATT
* * * **
97616 GAATGCTTTTCATGCTTCTAATTTTG-TTTTCCTATTGTTTTTTCTGTATTAATTTCTAATTAAA
507 GAATGCTTTTCACGCTTCTAATATCGTTTTTCCTATT-TTTTTTCTAAATTAATTTCTAATTAAA
* * * *
97680 TCGAAACAAC-ATTTAGATGCTCGTAAAAAGAAATCCTTAAATTCAATTTGGCTGCGATTTGGTT
571 TCGAAAC-ACGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATTTGGCTGAGATTTGGTT
*
97744 AGACG
635 AGAAG
* * *
97749 AATATAGATATTTCAAGGAGTCTTGGCACC-AAAAGTCATGCAAAACTGAGCCGGGGCCCCGGAA
1 AATATAGATATTTCAAGGAGTCTTGAC-CCAAAAAATCATGCAAAACTGAGCC-GGGCCCCAGAA
* * * *
97813 CGCGTTTTTAGCTAAAAACTGTGACGGTTAGTACACGATTTCGGGTAAAATTGACCCGAAATTTT
64 CGCGTTTTTAGCCAAAAACTGTGATGGTTTGTACACGATTTCGGCTAAAATTGACCCGAAATTTT
*
97878 TTCCCTCAATTTTGTGGCCAAAATACTTATATAA
129 TTCCCTCAA-TTTGTGGCCAAAATACTCATATAA
Statistics
Matches: 2302, Mismatches: 357, Indels: 204
0.80 0.12 0.07
Matches are distributed among these distances:
632 4 0.00
633 146 0.06
634 2 0.00
635 7 0.00
636 1 0.00
637 1 0.00
638 74 0.03
639 157 0.07
640 48 0.02
641 31 0.01
642 26 0.01
643 8 0.00
644 20 0.01
645 150 0.07
646 20 0.01
647 52 0.02
648 133 0.06
649 479 0.21
650 74 0.03
651 94 0.04
652 76 0.03
653 71 0.03
654 199 0.09
655 180 0.08
656 60 0.03
657 7 0.00
658 3 0.00
659 161 0.07
660 18 0.01
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (639 bp):
AATATAGATATTTCAAGGAGTCTTGACCCAAAAAATCATGCAAAACTGAGCCGGGCCCCAGAACG
CGTTTTTAGCCAAAAACTGTGATGGTTTGTACACGATTTCGGCTAAAATTGACCCGAAATTTTTT
CCCTCAATTTGTGGCCAAAATACTCATATAAATATATAATTCAACGCTAAAAAGACTGAAGGGCT
TTTCACGCTTCTAATATCATTTTTCTATTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGA
TTCAGATGCTCGTAAAAACAATTCCTTAAATCCAATTTGGCTGAGACTTGGTTAGATGAATATAG
ATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGACCCCAGAACGCGTTTT
TAGCCAAAAACCGTGATGGTTATTACACGATTTCGGCTAAAATTGACCCGAAATTTTTTCCCTCA
ATTTTTAGCCAAAATACTCATAAAAATATATAACTCAATGCAAAAAAGATTGAATGCTTTTCACG
CTTCTAATATCGTTTTTCCTATTTTTTTTCTAAATTAATTTCTAATTAAATCGAAACACGATTGA
GATGCTCGTAAAAACAAATCCTTAAATCCAATTTGGCTGAGATTTGGTTAGAAG
Done.