Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014915.1 Corchorus olitorius cultivar O-4 contig14948, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40640

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--787
335
2.3
336
91
1
1285
35
16
14
34
1.89
858--909
27
2.0
27
92
3
88
30
19
21
28
1.97
1551--1601
26
2.0
26
92
0
84
25
17
23
33
1.96
1941--2692
325
2.3
325
87
2
1040
33
13
16
36
1.89
3004--3123
58
2.1
58
90
7
190
40
15
7
37
1.75
2306--3454
384
3.0
386
87
7
1632
34
14
15
36
1.88
3062--4976
651
2.9
655
83
6
2510
33
13
16
36
1.88
3062--4976
331
5.8
330
84
7
2470
33
13
16
36
1.88
5564--5598
2
17.5
2
100
0
70
51
0
0
48
1.00
12152--12194
17
2.6
16
82
10
50
23
23
18
34
1.96
18514--18554
19
2.2
19
90
0
64
34
4
29
31
1.79
30566--30600
2
18.0
2
94
5
63
51
0
0
48
1.00

Tables:   1

The End!