Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014922.1 Corchorus olitorius cultivar O-4 contig14955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 107687
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Found at i:3177 original size:15 final size:15
Alignment explanation
Indices: 3157--3186 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
3147 CAAACCGGCT
*
3157 GAGAAGAAGGAGAAG
1 GAGAAGAAGCAGAAG
3172 GAGAAGAAGCAGAAG
1 GAGAAGAAGCAGAAG
3187 TTCTCGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.03, G:0.43, T:0.00
Consensus pattern (15 bp):
GAGAAGAAGCAGAAG
Found at i:4155 original size:48 final size:48
Alignment explanation
Indices: 4099--4194 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
4089 TTAATTAGTT
*
4099 ATGCGGCACGTGTTGTGTAATTCGGATTAACAGATTTAGTAGGTATGA
1 ATGCGGCACGTGTTGTGTAATTCAGATTAACAGATTTAGTAGGTATGA
4147 ATGCGGCACGTGTTGTGTAATTCAGATTAACAGATTTAGTAGGTATGA
1 ATGCGGCACGTGTTGTGTAATTCAGATTAACAGATTTAGTAGGTATGA
4195 GATTAAGTAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.33
Consensus pattern (48 bp):
ATGCGGCACGTGTTGTGTAATTCAGATTAACAGATTTAGTAGGTATGA
Found at i:4281 original size:56 final size:56
Alignment explanation
Indices: 4190--4297 Score: 139
Period size: 56 Copynumber: 1.9 Consensus size: 56
4180 ATTTAGTAGG
* * *
4190 TATGAGATTAAGTAGTTAATGTGATAAATGGGTCAGTAG-TCAATGGATTAAGCGGT
1 TATGAGACTAAGTAGTTAATGTGAGAAACGGGTCAGTAGCT-AATGGATTAAGCGGT
* *
4246 TATGAGACTAAG-ACGTTAATTTGAGAAACGTGTCAGTAGCTAATGGATTAAG
1 TATGAGACTAAGTA-GTTAATGTGAGAAACGGGTCAGTAGCTAATGGATTAAG
4298 TAGTTACAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
55 1 0.02
56 43 0.96
57 1 0.02
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (56 bp):
TATGAGACTAAGTAGTTAATGTGAGAAACGGGTCAGTAGCTAATGGATTAAGCGGT
Found at i:5898 original size:195 final size:197
Alignment explanation
Indices: 5559--5952 Score: 693
Period size: 195 Copynumber: 2.0 Consensus size: 197
5549 AGCATATACA
*
5559 GTGTGTGAAAGCATATATGGAAGCCTTGGCATTCAGGGTTGTAGAGTTCATGCTTATTTGGTAAG
1 GTGTGTGAAAGCATATATGGAAGCCTTGGCATTCAGGGATGTAGAGTTCATGCTTATTTGGTAAG
* *
5624 TCCATATATTTTAAATCTTGCTGTAACAACATTTTTCTGAAGCACAACCATTTCACTACAGCACA
66 TCCATATATCTTAAATCTTGCTATAACAACATTTTTCTGAAGCACAACCATTTCACTACAGCACA
* *
5689 AATATCAATTTGGATATGATATCTTTTATGTCTTGAGGTTTCATTTCTTTAATTTTCCTGACTGG
131 AATATCAATTTGGATATGATATCTTTTATGTCTTGAGGTTTCAATTCTTTAATTTACCTGACTGG
5754 CT
196 CT
5756 GTGTGTGAAAGCATATATGGAAGCCTTGGCATTCAGGGATGTAGA-TTCATGCTTATTTGGTAAG
1 GTGTGTGAAAGCATATATGGAAGCCTTGGCATTCAGGGATGTAGAGTTCATGCTTATTTGGTAAG
* * *
5820 TCCATATATCTTAAATCTTGTTATAGCAACA-TTTTCTGAAGCATAACCATTTCACTACAGCACA
66 TCCATATATCTTAAATCTTGCTATAACAACATTTTTCTGAAGCACAACCATTTCACTACAGCACA
*
5884 AATATCAATTTGGATATGATATCTTTTATGTCTTGAGGTTTGAATTCTTTAATTTACCTGACTGG
131 AATATCAATTTGGATATGATATCTTTTATGTCTTGAGGTTTCAATTCTTTAATTTACCTGACTGG
5949 CT
196 CT
5951 GT
1 GT
5953 ATTTGCAATT
Statistics
Matches: 188, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
195 98 0.52
196 46 0.24
197 44 0.23
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (197 bp):
GTGTGTGAAAGCATATATGGAAGCCTTGGCATTCAGGGATGTAGAGTTCATGCTTATTTGGTAAG
TCCATATATCTTAAATCTTGCTATAACAACATTTTTCTGAAGCACAACCATTTCACTACAGCACA
AATATCAATTTGGATATGATATCTTTTATGTCTTGAGGTTTCAATTCTTTAATTTACCTGACTGG
CT
Found at i:11976 original size:18 final size:18
Alignment explanation
Indices: 11936--11977 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
11926 GACTCAGACT
11936 CAAACTAACTGACTCAAA
1 CAAACTAACTGACTCAAA
*
11954 AAAACTAAACTGACTC-AA
1 CAAACT-AACTGACTCAAA
11972 CAAACT
1 CAAACT
11978 GACTAAACCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.52, C:0.26, G:0.05, T:0.17
Consensus pattern (18 bp):
CAAACTAACTGACTCAAA
Found at i:22422 original size:18 final size:19
Alignment explanation
Indices: 22387--22422 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
22377 TATCAACTGC
*
22387 AATTTCATGGTTGTTTTCA
1 AATTTCATGGTGGTTTTCA
22406 AATTTCAT-GTGGTTTTC
1 AATTTCATGGTGGTTTTC
22423 TGGATTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.19, C:0.11, G:0.17, T:0.53
Consensus pattern (19 bp):
AATTTCATGGTGGTTTTCA
Found at i:32934 original size:3 final size:3
Alignment explanation
Indices: 32926--32950 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
32916 TAATTCTCTA
32926 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
32951 CCCATGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:34991 original size:2 final size:2
Alignment explanation
Indices: 34980--35026 Score: 69
Period size: 2 Copynumber: 23.5 Consensus size: 2
34970 ATATTTAGTG
*
34980 TA TA TA -A TA TA TA TA TA TA TA TA TA TT TA GTA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
35022 TA TA T
1 TA TA T
35027 TTTTCCCCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 1 0.02
2 38 0.93
3 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:35013 original size:21 final size:21
Alignment explanation
Indices: 34989--35028 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
34979 GTATATAATA
34989 TATATATATATATATATTTAG
1 TATATATATATATATATTTAG
35010 TATATATATATATATATTT
1 TATATATATATATATATTT
35029 TTCCCCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
TATATATATATATATATTTAG
Found at i:43976 original size:6 final size:6
Alignment explanation
Indices: 43952--43986 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
43942 AAGAGTCAGA
* *
43952 AGAAGC AGAGGC TGAAGC AGAAGC AGAAGC AGAAG
1 AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGAAG
43987 TTGCGGTTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.46, C:0.14, G:0.37, T:0.03
Consensus pattern (6 bp):
AGAAGC
Found at i:65366 original size:1 final size:1
Alignment explanation
Indices: 65360--65391 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
65350 ATCTTACAGC
65360 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
65392 GAACAGGTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:82807 original size:4 final size:4
Alignment explanation
Indices: 82798--82827 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
82788 TCACTTTCAC
82798 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT
82828 ATACTGAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
CTTT
Found at i:84439 original size:12 final size:12
Alignment explanation
Indices: 84422--84449 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
84412 CAGTACTCTT
84422 ACTATAAATATA
1 ACTATAAATATA
84434 ACTATAAATATA
1 ACTATAAATATA
84446 ACTA
1 ACTA
84450 GATGGCCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (12 bp):
ACTATAAATATA
Found at i:84572 original size:64 final size:66
Alignment explanation
Indices: 84456--84582 Score: 240
Period size: 64 Copynumber: 2.0 Consensus size: 66
84446 ACTAGATGGC
84456 CTGAATTTTTTGGTATTAACCATCCAAAAAAAAATTTGACTGCTCCGAGCCGTATCGGATTCCCA
1 CTGAATTTTTTGGTATTAACCATCCAAAAAAAAATTTGACTGCTCCGAGCCGTATCGGATTCCCA
84521 T
66 T
84522 CTGAA-TTTTTGGTATTAACCATCC-AAAAAAAATTTGACTGCTCCGAGCCGTATCGGATTCC
1 CTGAATTTTTTGGTATTAACCATCCAAAAAAAAATTTGACTGCTCCGAGCCGTATCGGATTCC
84583 ATATTGGGAA
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
64 37 0.61
65 19 0.31
66 5 0.08
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (66 bp):
CTGAATTTTTTGGTATTAACCATCCAAAAAAAAATTTGACTGCTCCGAGCCGTATCGGATTCCCA
T
Found at i:90198 original size:78 final size:78
Alignment explanation
Indices: 90069--90224 Score: 285
Period size: 78 Copynumber: 2.0 Consensus size: 78
90059 TATCCGAAAT
* *
90069 AGAGGTCAGTTCTTGTCACTTGCTCTTATTTATGCCTTTTGTACTGTCATGATGTTTTCCTGATG
1 AGAGGTCAGTACTTGTCACGTGCTCTTATTTATGCCTTTTGTACTGTCATGATGTTTTCCTGATG
90134 CTGTCAGTTTTCC
66 CTGTCAGTTTTCC
*
90147 AGAGGTCAGTACTTGTCACGTGCTCTTATTTATGCCTTTTTTACTGTCATGATGTTTTCCTGATG
1 AGAGGTCAGTACTTGTCACGTGCTCTTATTTATGCCTTTTGTACTGTCATGATGTTTTCCTGATG
90212 CTGTCAGTTTTCC
66 CTGTCAGTTTTCC
90225 TCAGTCAATT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.15, C:0.21, G:0.19, T:0.46
Consensus pattern (78 bp):
AGAGGTCAGTACTTGTCACGTGCTCTTATTTATGCCTTTTGTACTGTCATGATGTTTTCCTGATG
CTGTCAGTTTTCC
Found at i:94071 original size:16 final size:16
Alignment explanation
Indices: 94050--94084 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
94040 ACCACAACTT
94050 TTACAAAGTCAAAGTG
1 TTACAAAGTCAAAGTG
94066 TTACAAAGTCAAAGTG
1 TTACAAAGTCAAAGTG
94082 TTA
1 TTA
94085 GTACGCGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (16 bp):
TTACAAAGTCAAAGTG
Found at i:94211 original size:24 final size:24
Alignment explanation
Indices: 94166--94210 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
94156 AATCTCGAAC
*
94166 AATTCTTTTCTTTTGTTATTTTCT
1 AATTCTCTTCTTTTGTTATTTTCT
*
94190 AATTCTCTT-TTTTGTTCTTTT
1 AATTCTCTTCTTTTGTTATTTT
94211 TATCTGTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.11, C:0.13, G:0.04, T:0.71
Consensus pattern (24 bp):
AATTCTCTTCTTTTGTTATTTTCT
Found at i:96964 original size:50 final size:50
Alignment explanation
Indices: 96888--97354 Score: 715
Period size: 50 Copynumber: 9.4 Consensus size: 50
96878 TTATAATTTT
*
96888 TAAAAAATTTAGTAATTAGGAAACCGATGGGAGCTGTCTCCCCAAACATC
1 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
*
96938 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACACC
1 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
** * *
96988 CGAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTTCCCAAACACC
1 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
**
97038 TAAAATTTTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
1 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
* *
97088 TAAAACA-TT--TAATTAGGAGACCGATGGGAGCTGACTCCCCAAACATC
1 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
* * *
97135 TAAAAAATTCAGTAATTAGGAGACCGATGGGAGCTGACTCCCCAAACACC
1 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
*
97185 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGTTGTCTCCCCAAACATC
1 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
* *
97235 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTTCCCAAACATT
1 TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
* * * *
97285 TAAAAAAATTTAGTAATTAGGAGACCGATGAGAGCTGTCTCTCCAAATATT
1 T-AAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
*
97336 TAAAAGATTTAGTAATTAG
1 TAAAAAATTTAGTAATTAG
97355 CATAGTGACA
Statistics
Matches: 384, Mismatches: 29, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 43 0.11
48 1 0.00
49 2 0.01
50 292 0.76
51 46 0.12
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (50 bp):
TAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATC
Found at i:97248 original size:197 final size:200
Alignment explanation
Indices: 96889--97354 Score: 722
Period size: 197 Copynumber: 2.3 Consensus size: 200
96879 TATAATTTTT
*
96889 AAAAAATTTAGTAATTAGGAAACCGATGGGAGCTGTCTCCCCAAACATCTAAAAAATTTAGTAAT
1 AAAAAATTTA-TAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATCTAAAAAATTTAGTAAT
* *
96954 TAGGAGACCGATGGGAGCTGTCTCCCCAAACACCCGAAAAATTTAGTAATTAGGAGACCGATGGG
65 TAGGAGACCGATGGGAGCTGACTCCCCAAACACCCAAAAAATTTAGTAATTAGGAGACCGATGGG
* **
97019 AGCTGTCTTCCCAAACACCTAAAATTTTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAA
130 AGCTGTCTCCCCAAACACCTAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAA
97084 CATCT-
195 CATCTA
* * *
97089 AAAACA-TT-TAATTAGGAGACCGATGGGAGCTGACTCCCCAAACATCTAAAAAATTCAGTAATT
1 AAAAAATTTATAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATCTAAAAAATTTAGTAATT
*
97152 AGGAGACCGATGGGAGCTGACTCCCCAAACACCTAAAAAATTTAGTAATTAGGAGACCGATGGGA
66 AGGAGACCGATGGGAGCTGACTCCCCAAACACCCAAAAAATTTAGTAATTAGGAGACCGATGGGA
* * *
97217 GTTGTCTCCCCAAACATCTAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTTCCCAAAC
131 GCTGTCTCCCCAAACACCTAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAAC
*
97282 ATTTA
196 ATCTA
* * * * *
97287 AAAAAATTTAGTAATTAGGAGACCGATGAGAGCTGTCTCTCCAAATATTTAAAAGATTTAGTAAT
1 AAAAAATTTA-TAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATCTAAAAAATTTAGTAAT
97352 TAG
65 TAG
97355 CATAGTGACA
Statistics
Matches: 240, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
197 176 0.73
198 5 0.02
199 4 0.02
200 5 0.02
201 50 0.21
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (200 bp):
AAAAAATTTATAATTAGGAGACCGATGGGAGCTGTCTCCCCAAACATCTAAAAAATTTAGTAATT
AGGAGACCGATGGGAGCTGACTCCCCAAACACCCAAAAAATTTAGTAATTAGGAGACCGATGGGA
GCTGTCTCCCCAAACACCTAAAAAATTTAGTAATTAGGAGACCGATGGGAGCTGTCTCCCCAAAC
ATCTA
Found at i:100394 original size:9 final size:9
Alignment explanation
Indices: 100380--100414 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
100370 AATCCTCTAT
100380 TTTTTTTCC
1 TTTTTTTCC
100389 TTTTTTTCC
1 TTTTTTTCC
100398 TTTTTTTTCC
1 -TTTTTTTCC
100408 TTTTTTT
1 TTTTTTT
100415 TGGGCCTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTTCC
Found at i:100394 original size:10 final size:10
Alignment explanation
Indices: 100379--100415 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
100369 TAATCCTCTA
100379 TTTTTTTTCC
1 TTTTTTTTCC
100389 -TTTTTTTCC
1 TTTTTTTTCC
100398 TTTTTTTTCC
1 TTTTTTTTCC
100408 TTTTTTTT
1 TTTTTTTT
100416 GGGCCTGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTTCC
Found at i:100917 original size:40 final size:41
Alignment explanation
Indices: 100828--101184 Score: 626
Period size: 40 Copynumber: 9.0 Consensus size: 41
100818 TTGAGGGCCA
100828 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
100869 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGG-AAGTTGG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
100909 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
100950 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
100991 ATGTG-ATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
101031 ATGTG-ATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
101071 ATGTGAATTAAGGC-AGTTCAATGTCATTT-GG-AAGTTGG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
*
101109 ATGTGAATTAAGGCAAGTTCAATGTCAATTGGGAAAGTTGG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
*
101150 A--TG--TTAAGGCAAGTTCAATGTCAATTGGGAAAGTT
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTT
101185 AAACGTGAAT
Statistics
Matches: 310, Mismatches: 1, Indels: 14
0.95 0.00 0.04
Matches are distributed among these distances:
37 32 0.10
38 21 0.07
39 18 0.06
40 137 0.44
41 102 0.33
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (41 bp):
ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGG
Found at i:100963 original size:81 final size:82
Alignment explanation
Indices: 100828--101184 Score: 626
Period size: 81 Copynumber: 4.5 Consensus size: 82
100818 TTGAGGGCCA
100828 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGAATTAAGGCAAGTTCAATG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGAATTAAGGCAAGTTCAATG
100893 TCATTTGGG-AAGTTGG
66 TCATTTGGGAAAGTTGG
100909 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGAATTAAGGCAAGTTCAATG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGAATTAAGGCAAGTTCAATG
100974 TCATTTGGGAAAGTTGG
66 TCATTTGGGAAAGTTGG
100991 ATGTG-ATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTG-ATTAAGGCAAGTTCAATG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGAATTAAGGCAAGTTCAATG
101054 TCATTTGGGAAAGTTGG
66 TCATTTGGGAAAGTTGG
101071 ATGTGAATTAAGGC-AGTTCAATGTCATTT-GG-AAGTTGGATGTGAATTAAGGCAAGTTCAATG
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGAATTAAGGCAAGTTCAATG
*
101133 TCAATTGGGAAAGTTGG
66 TCATTTGGGAAAGTTGG
*
101150 A--TG--TTAAGGCAAGTTCAATGTCAATTGGGAAAGTT
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTT
101185 AAACGTGAAT
Statistics
Matches: 268, Mismatches: 2, Indels: 15
0.94 0.01 0.05
Matches are distributed among these distances:
75 7 0.03
76 14 0.05
77 4 0.01
78 17 0.06
79 37 0.14
80 55 0.21
81 122 0.46
82 12 0.04
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (82 bp):
ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGAATTAAGGCAAGTTCAATG
TCATTTGGGAAAGTTGG
Found at i:103845 original size:37 final size:41
Alignment explanation
Indices: 103758--103847 Score: 107
Period size: 44 Copynumber: 2.2 Consensus size: 41
103748 TTGGCCTCCA
*
103758 TGGGCCTTCAAAGCTTATTGTTAAAAATCATAGGCTTATTATAT
1 TGGGCCTTCAAAGCATATTGTTAAAAA-CATAGG--TATTATAT
*
103802 TAGGCCTTCAAAGCATATTGTT-AAAA-AT-GG-ATTATAT
1 TGGGCCTTCAAAGCATATTGTTAAAAACATAGGTATTATAT
103839 TGGGCCTTC
1 TGGGCCTTC
103848 CAAGTAATGA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
37 15 0.35
40 2 0.05
41 2 0.05
43 4 0.09
44 20 0.47
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (41 bp):
TGGGCCTTCAAAGCATATTGTTAAAAACATAGGTATTATAT
Found at i:104650 original size:330 final size:330
Alignment explanation
Indices: 104037--105362 Score: 1898
Period size: 330 Copynumber: 4.0 Consensus size: 330
104027 AATGGGCCTG
* *
104037 ATTGTG-TGGTTAGTACATGATTTCGGTCAAAATTTTACAAAAACTGTCCCGAAAAATTTTTCCT
1 ATTGTGATGGTTAGTACATGATTTCGGACAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCT
* * * *
104101 CAATTTTTGGATACAATACTCATAAAAAATATATATCTCAACGCCAAACAAATTTAAAGGCTTTT
66 CAATTTTTGGACACAATACTCATAAAAGATATATAACTCAACGCCAAACAAATTTAAGGGCTTTT
104166 CATGTTTATAATATCGTTTTTCCTATTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCA
131 CATGTTTATAATATCGTTTTTCCTATTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCA
* * *
104231 GATGCTCGTAAAACCTTATCCTTCAATCGATTGTGGCTGAGATTTGGTTAGATGAACATAGATAT
196 GATGCTCGTAAAACCTTATCCTTAAATCGATTGTAGCTAAGATTTGGTTAGATGAACATAGATAT
* * * *
104296 TTTAAGGAGTCTTGTTGGCAAAAATCATCCAAAACTATGTCGGGGATTAGGAACTCGTTTTTAGC
261 TTTAAGGAGTCTTGCTGCCAAAAATCATCCAAAACTGTGTCGGGGACTAGGAACTCGTTTTTAGC
104361 CAAAA
326 CAAAA
* *
104366 ATTGTGATGGTTAGTACATGATTTCCGACAAAATTTTGCAAAAATTGTCCCGAAAAATTTTTCCT
1 ATTGTGATGGTTAGTACATGATTTCGGACAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCT
104431 CAATTTTTGGACACAATACTCATAAAAGATATATAACTCAACGCCACAA-AAATTTAAGGGCTTT
66 CAATTTTTGGACACAATACTCATAAAAGATATATAACTCAACGCCA-AACAAATTTAAGGGCTTT
* **
104495 TCATGTTTATAATATTGTTTTTCCTATTTTATGAATTAATTTCTAATTAAATCGAAACATAATTC
130 TCATGTTTATAATATCGTTTTTCCTATTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTC
* *
104560 AGATACTCGTAAAACCTTCTCCTTAAATCGATTGTAGCTAAGATTTGGTTAGATGAACATAGATA
195 AGATGCTCGTAAAACCTTATCCTTAAATCGATTGTAGCTAAGATTTGGTTAGATGAACATAGATA
*
104625 TTTTAAGGAGTCTTGCTGCCAAAAATCATCCAAAACTGTGTCGGGGCCTAGGAACTCGTTTTTAG
260 TTTTAAGGAGTCTTGCTGCCAAAAATCATCCAAAACTGTGTCGGGGACTAGGAACTCGTTTTTAG
104690 CCAAAA
325 CCAAAA
* *
104696 ATTGTGAT-G---GTACACGATTTCGGCCAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCT
1 ATTGTGATGGTTAGTACATGATTTCGGACAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCT
* * * * * *
104757 CAATTTTTGGCCACAACACTCATAAAA-AGTATATAATTCAA-GTCCAAATAGATTGAAGGGCTT
66 CAATTTTTGGACACAATACTCATAAAAGA-TATATAACTCAACG-CCAAACAAATTTAAGGGCTT
* * * * *
104820 TACACGCTTCA-ATTATCGTTTTTCCTATTTTTTTCCGGATTAATTTCTAATTAAATCGAAACAT
129 TTCATG-TTTATAATATCGTTTTTCCTA---TTTTCCGAATTAATTTCTAATTAAATCGAAACAT
* * * ** * * * * * *
104884 TATTCAGATGCTCGAAAAAACAAATCCTTCAATCCAATGTAGCTTAGAATTGGTTAGATGAATAT
190 AATTCAGATGCTCGTAAAACCTTATCCTTAAATCGATTGTAGCTAAGATTTGGTTAGATGAACAT
* * ** * * * * *
104949 AGATATTTCAATGACACTTGGC-GCCAAAAATCATGCAAAATTGTGTCGGGGACCATGAACACGT
255 AGATATTTTAAGGAGTCTT-GCTGCCAAAAATCATCCAAAACTGTGTCGGGGACTAGGAACTCGT
*
105013 TTATAGCCAAAA
319 TTTTAGCCAAAA
* * *
105025 ATTGTGATGGTTAGTACATGATTTCGGACACAATTTTGGAAAAACTATCCCGAAAAATTTTTCCT
1 ATTGTGATGGTTAGTACATGATTTCGGACAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCT
* * *
105090 CAATTTTTGGCCACAATACTCATAAAAGATATATAACTCAACGCCAAAAAAATTTAAGGGCCTTT
66 CAATTTTTGGACACAATACTCATAAAAGATATATAACTCAACGCCAAACAAATTTAAGGGCTTTT
105155 CATGTTTATAATATCGTTTTTCCTATTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCA
131 CATGTTTATAATATCGTTTTTCCTATTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCA
*
105220 GATGCTCGTAAAACCTTCTCCTTAAATCGATTGTAGCTAAGATTTGGTTAGATGAACATAGATAT
196 GATGCTCGTAAAACCTTATCCTTAAATCGATTGTAGCTAAGATTTGGTTAGATGAACATAGATAT
* * ** *
105285 TTTAAGGAGTCTTGCTGCAAAAAATCATCCAAAACTGTGTCAGGTCCTAGGAACTCGTTTTTAGT
261 TTTAAGGAGTCTTGCTGCCAAAAATCATCCAAAACTGTGTCGGGGACTAGGAACTCGTTTTTAGC
105350 CAAAA
326 CAAAA
*
105355 ATTTTGAT
1 ATTGTGAT
105363 TAAAAAAACA
Statistics
Matches: 873, Mismatches: 106, Indels: 35
0.86 0.10 0.03
Matches are distributed among these distances:
325 4 0.00
326 117 0.13
327 3 0.00
329 162 0.19
330 461 0.53
331 2 0.00
332 3 0.00
333 119 0.14
334 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (330 bp):
ATTGTGATGGTTAGTACATGATTTCGGACAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCT
CAATTTTTGGACACAATACTCATAAAAGATATATAACTCAACGCCAAACAAATTTAAGGGCTTTT
CATGTTTATAATATCGTTTTTCCTATTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCA
GATGCTCGTAAAACCTTATCCTTAAATCGATTGTAGCTAAGATTTGGTTAGATGAACATAGATAT
TTTAAGGAGTCTTGCTGCCAAAAATCATCCAAAACTGTGTCGGGGACTAGGAACTCGTTTTTAGC
CAAAA
Found at i:106889 original size:333 final size:332
Alignment explanation
Indices: 105364--107687 Score: 3215
Period size: 334 Copynumber: 7.0 Consensus size: 332
105354 AATTTTGATT
* * *
105364 AAAAAAACAAATCCTTGACTTCAATTTAGCTGAGAATTGGTTAGATGAATATACATATTTCAATG
1 AAAAAAACAAATCCTTCA-ATCAATTTAGCTGAGAATTGGTTAGATGAATATAGATATTTCAATG
* *
105429 ACACTTGACGCCAAAAATCATGCAAAACTGTGTCGGAGCCCAGGAACACCTTTTTAGCCAAAAAC
65 ACACTTGACGCCAAAAATCATGCAAAACTGTGTCGGGGCCCAGGAACACGTTTTTAGCCAAAAAC
* * *
105494 TGTGATGGTTAGTAAACGATTTCGGCCAAAATTTTGCAAAAATTGTCCCGAAAAATTTTACCTCA
130 TGTGATGGTTAGTACACGATTTCGGCCAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCTCA
*
105559 ATTTTTGGGCACAACACTCATAAAAAATATATAATTCAAGTCCAAATATATTTG-AGGGCTTTAC
195 ATTTTTGGGCACAACACTCATAAAAAATATATAATTCAAGTCCAAATAGA-TTGAAGGGCTTTAC
* *
105623 ACGCTTCAGTTATCATTTTTCCTATTTTTTTCCGGATTAATTTCTAATTAAATCGAAACATTATT
259 ACGCTTCAATTATCGTTTTTCCTA-TTTTTTCCGGATTAATTTCTAATTAAATCGAAACATTATT
105688 CAGATGCTCG
323 CAGATGCTCG
* * *
105698 AAAAAAAGAAATCTTTCAATCAAATGTAGCTGAGAATTGGTTAGATGAATATAGATATTTCAATG
1 AAAAAAACAAATCCTTCAATC-AATTTAGCTGAGAATTGGTTAGATGAATATAGATATTTCAATG
* * * * *
105763 ACACTTGCCGCAAAAAATCATGCAAAATTGTGTCGGGGCCCATGAACACGTTTTTAGCAAAAAAC
65 ACACTTGACGCCAAAAATCATGCAAAACTGTGTCGGGGCCCAGGAACACGTTTTTAGCCAAAAAC
* * *
105828 TGTGATGGTTAGTACATGATTTCAGACAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCTCA
130 TGTGATGGTTAGTACACGATTTCGGCCAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCTCA
* * ** * * * * *
105893 ATTTTTGGCCACAATACTCATAAAAGTTATATAACTCAACG-CCAAAAAAATTTAAGGGCTTTTC
195 ATTTTTGGGCACAACACTCATAAAAAATATATAATTCAA-GTCCAAATAGATTGAAGGGCTTTAC
* * * * * *
105957 ATG-TTTATAATATCGTTTTTCCTA--TTTTCTGAATTAATTTCTAATTAAATCGAAACATAATT
259 ACGCTTCA-ATTATCGTTTTTCCTATTTTTTCCGGATTAATTTCTAATTAAATCGAAACATTATT
106019 CAGATGCTCG
323 CAGATGCTCG
* * *** * * * * * * *
106029 -TAAAACCTTCTCCTTAAATCGATTGTAGCTAAGATTTGGTTAGATGAACATAGATATTTTAAGG
1 AAAAAAACAAATCCTTCAATCAATT-TAGCTGAGAATTGGTTAGATGAATATAGATATTTCAATG
** * * * *
106093 AGTCTTG-CTGCAAAAAATCATCCAAAACTGTGTCGGGGCCTAGGAACTCGTTTTTAGCCAAAAA
65 ACACTTGAC-GCCAAAAATCATGCAAAACTGTGTCGGGGCCCAGGAACACGTTTTTAGCCAAAAA
*
106157 TTGTGATGGTTAGTACACGATTTCGGCCAAAATTTTGCAAAAACTGTCCCG-AAAATTTTTCCTC
129 CTGTGATGGTTAGTACACGATTTCGGCCAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCTC
*
106221 AATTTTTGGCCACAACACTCATAAAAAATATATAATTCAAGTCCAAATAGATTGAAGGGCTTTAC
194 AATTTTTGGGCACAACACTCATAAAAAATATATAATTCAAGTCCAAATAGATTGAAGGGCTTTAC
** * * * *
106286 ACGCTTCAATTATCGTTTTTCCTATTTTTTGGGGATCAATTTCCAATTAAATAGAAACATTATTT
259 ACGCTTCAATTATCGTTTTTCCTATTTTTTCCGGATTAATTTCTAATTAAATCGAAACATTATTC
106351 AGATGCT--
324 AGATGCTCG
* * *
106358 TAAAAAAGAAATCCTTAAATTCAATTTAGCTGAGAATTGGTTAGATGAATATAGATATTTCAATG
1 AAAAAAACAAATCCTTCAA-TCAATTTAGCTGAGAATTGGTTAGATGAATATAGATATTTCAATG
*
106423 ACACTTGGCGCCAAAAATCATGCAAAACTGTGTCGGGGCCCAGGAACACGTTTTTAGCCAAAAAC
65 ACACTTGACGCCAAAAATCATGCAAAACTGTGTCGGGGCCCAGGAACACGTTTTTAGCCAAAAAC
*
106488 TGTGATGGTTAGTACACGATTTCGGCCAAAATTTTGCAAAAACTGTTCCGAAAAATTTTTCCTCA
130 TGTGATGGTTAGTACACGATTTCGGCCAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCTCA
*
106553 ATTTTTGGCCACAACACTCATAAAAAATATATAATTCAAGTCCAAATAGATTGAAGGGCTTTACA
195 ATTTTTGGGCACAACACTCATAAAAAATATATAATTCAAGTCCAAATAGATTGAAGGGCTTTACA
* *
106618 CGCTTCAATTATCGTTTTTCCTATTTTTTCGGGATTAATTTCTAATTAAATCGAAACATTATTTA
260 CGCTTCAATTATCGTTTTTCCTATTTTTTCCGGATTAATTTCTAATTAAATCGAAACATTATTCA
*
106683 GATGCTTG
325 GATGCTCG
* *
106691 -AAAAAACAAATCCTTGAATTCAATTTAGCTGAGAATTGGTTAGATGAATAATACATATTTCAAT
1 AAAAAAACAAATCCTTCAA-TCAATTTAGCTGAGAATTGGTTAGATGAAT-ATAGATATTTCAAT
* * *
106755 GACACTTGACGCCAAAAATCATGCAAAACTGTGTCGGGTCCAAGGAACACCTTTTTAGCCAAAAA
64 GACACTTGACGCCAAAAATCATGCAAAACTGTGTCGGGGCCCAGGAACACGTTTTTAGCCAAAAA
* *
106820 CTGTGATGGTTAGTAAACGATTTCGGCCAAAATTTTGCAAAAACTGTCCCGAAAAATTTTACCTC
129 CTGTGATGGTTAGTACACGATTTCGGCCAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCTC
* *
106885 AATTTTTGGGCACAACACTCATAAGAAATATATAATTCAAGTCCAAATAGATTTG-AGGGCTTCA
194 AATTTTTGGGCACAACACTCATAAAAAATATATAATTCAAGTCCAAATAGA-TTGAAGGGCTTTA
* *
106949 CACGCTTCAGTTATCATTTTTCCTATTTTTTTCCGGATTAATTTCTAATTAAATCGAAACATTAT
258 CACGCTTCAATTATCGTTTTTCCTA-TTTTTTCCGGATTAATTTCTAATTAAATCGAAACATTAT
107014 TCAGATGCTCG
322 TCAGATGCTCG
* *
107025 AAAAAAACGAAATCTTTCAATCAAATGTAGCTGAGAATTGGTTAGATGAATATAGATATTTCAAT
1 AAAAAAAC-AAATCCTTCAATC-AATTTAGCTGAGAATTGGTTAGATGAATATAGATATTTCAAT
* * * * *
107090 GACACTTGCCGCAAAAAAACTCATGCAAAATTTTGTCGGGGTCCCATGAACACGTTTTTAGCCAA
64 GACACTTGACGC-CAAAAA-TCATGCAAAACTGTGTCGGGG-CCCAGGAACACGTTTTTAGCCAA
* *
107155 AAACTGTGATGGTTAGTACACGATTTCGGCCAAAATTTTGCAAAAACTGTCTCGAAAAATTTTAC
126 AAACTGTGATGGTTAGTACACGATTTCGGCCAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTC
*
107220 CTCAATTTTTGGGCACAACACTCATAAGAAATATATAATTCAAGTCCAAATAGATTTG-AGGGCT
191 CTCAATTTTTGGGCACAACACTCATAAAAAATATATAATTCAAGTCCAAATAGA-TTGAAGGGCT
* * * * *
107284 TTAGACGCTTCAGTTATCATTTTTCCTATTTTTTTCCGGATTAATTCCTGATTAAATCGAAACAT
255 TTACACGCTTCAATTATCGTTTTTCCTA-TTTTTTCCGGATTAATTTCTAATTAAATCGAAACAT
*
107349 TATTTAGATGCTCG
319 TATTCAGATGCTCG
* *
107363 AAAAAAACAAATCTTTCAATCAAATGTAGCTGAGAATTGGTTAGATGAATATAGATATTTCAATG
1 AAAAAAACAAATCCTTCAATC-AATTTAGCTGAGAATTGGTTAGATGAATATAGATATTTCAATG
* *
107428 ACACTTGGCGCCAAAAATCATGCAAAACTGTGTCGGGGCCCAGGAACATGTTTTTAGCCAAAAAC
65 ACACTTGACGCCAAAAATCATGCAAAACTGTGTCGGGGCCCAGGAACACGTTTTTAGCCAAAAAC
* * * *
107493 TGTGATGGATAGTACACGATTTCGGCCAAAATTTTGAAAAAAAATGTCCCGAAATATTTTTCCTC
130 TGTGATGGTTAGTACACGATTTCGGCCAAAATTTTG-CAAAAACTGTCCCGAAAAATTTTTCCTC
* * * * * * *
107558 AATTTTTGGAGGACAATACTCATAAAAGATATATAACTCAACG-CCAAAAAAATTTAAGGGCTTT
194 AATTTTTGG-GCACAACACTCATAAAAAATATATAATTCAA-GTCCAAATAGATTGAAGGGCTTT
* * * * * * *
107622 TCATG-TTTATAATATCGTTTTTCCTA--TTTTCTGAATTAATTTCTAATTAAATCGAAACATAA
257 ACACGCTTCA-ATTATCGTTTTTCCTATTTTTTCCGGATTAATTTCTAATTAAATCGAAACATTA
107684 TTCA
321 TTCA
Statistics
Matches: 1784, Mismatches: 176, Indels: 61
0.88 0.09 0.03
Matches are distributed among these distances:
328 1 0.00
329 88 0.05
330 301 0.17
331 235 0.13
332 47 0.03
333 257 0.14
334 348 0.20
335 90 0.05
336 102 0.06
337 86 0.05
338 229 0.13
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.32
Consensus pattern (332 bp):
AAAAAAACAAATCCTTCAATCAATTTAGCTGAGAATTGGTTAGATGAATATAGATATTTCAATGA
CACTTGACGCCAAAAATCATGCAAAACTGTGTCGGGGCCCAGGAACACGTTTTTAGCCAAAAACT
GTGATGGTTAGTACACGATTTCGGCCAAAATTTTGCAAAAACTGTCCCGAAAAATTTTTCCTCAA
TTTTTGGGCACAACACTCATAAAAAATATATAATTCAAGTCCAAATAGATTGAAGGGCTTTACAC
GCTTCAATTATCGTTTTTCCTATTTTTTCCGGATTAATTTCTAATTAAATCGAAACATTATTCAG
ATGCTCG
Done.