Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014924.1 Corchorus olitorius cultivar O-4 contig14957, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129164

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34364--34390
6
4.5
6
100
0
54
0
14
29
55
1.40
45245--45315
35
2.1
35
97
2
135
28
18
14
39
1.89
47327--47510
97
1.9
97
86
5
255
33
9
5
51
1.59
47564--48726
337
3.5
332
79
5
1179
32
15
17
35
1.91
49126--49172
23
2.0
23
88
8
69
40
2
2
55
1.24
49192--49237
24
2.0
23
86
4
65
17
10
0
71
1.13
49386--49411
13
2.0
13
100
0
52
38
0
15
46
1.46
51488--55694
333
12.6
332
77
6
4012
32
15
16
35
1.90
50161--55694
669
8.2
668
87
4
6748
32
15
16
35
1.90
65584--65617
6
5.7
6
89
0
50
20
2
58
17
1.51
72525--72557
2
16.5
2
93
0
57
48
3
0
48
1.17
81832--81917
12
7.2
12
67
10
50
5
34
4
54
1.45
81828--81925
36
2.7
36
91
0
169
6
34
5
54
1.48
86659--86693
14
2.6
13
90
4
52
74
14
11
0
1.08
100187--100215
8
3.8
8
90
9
51
34
13
27
24
1.93
114427--114481
27
2.0
27
100
0
110
14
14
18
52
1.74
116338--116531
103
1.9
104
84
5
268
33
21
21
23
1.97
128126--129161
333
3.2
325
87
5
1423
34
16
16
31
1.92
128137--129161
319
3.2
312
86
5
1264
34
16
16
31
1.92

Tables:   1

The End!