Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014925.1 Corchorus olitorius cultivar O-4 contig14958, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2866
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Found at i:1154 original size:332 final size:331
Alignment explanation
Indices: 1--2865 Score: 3511
Period size: 331 Copynumber: 8.5 Consensus size: 331
* *
1 TTCTGATGCTCGTAAATACAAATCTTTAAATCTTATGTGGCTGAGATTTGGGTAGATGAATATAG
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTAGATGAATATAG
* * ** * * * * *
66 ATATTCCAAGGAGTCTTGGAGAAAAAAATCTTACAAAACTGAGCGGAGGCCCCGAAACGCCTTTT
66 ATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCG-GGCCCTGGAACGCGTTTT
* * *
131 TAGACGAAAACTGTGATGGTTAGCACACGATTTCGGTCAATAATTTGCAAAAATTGACCCGAATG
130 TAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATG
* * * *
196 ATTTTTCCTAAATTTTTAGCCAAAATACTCAT-AAAAATATATGAATCATCGCCAAGAAGATTGA
195 ATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCGCCAA-AAAATTGA
* *
260 AGGGTTTTTAGAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATGAATTTCCAATTAAATCG
259 AGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCCAATTAAATCG
325 AAACTGGA
324 AAACTGGA
* ** * * *
333 TTATGATGCTCGTAAAAA-AAATCTCCAAATCATATGTGGCTGAGATTTAGGCAGGTGAATATAG
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTAGATGAATATAG
* * *
397 GTATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTAAGCCGGGGACCTGGAACGCGTTTT
66 ATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-GGGCCCTGGAACGCGTTTT
* *
462 TAGCCGAAAACTGTAATGGTTAGTACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATG
130 TAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATG
*
527 ATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAAAAAATTGA
195 ATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCGCC-AAAAAATTGA
* *
592 AGGGTTTTTAAAGCTTCGAATATCATTTTTCCTATATTTTTCCGAATTAATTTCCAATTAAATCG
259 AGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCCAATTAAATCG
657 AAACTGGA
324 AAACTGGA
* * * *
665 TTCTCATGCTTGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTGGATGAATTTAG
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTAGATGAATATAG
* *
730 ATATTCAAAGGAGTCTTGGCGCTAAAAATCATACAAAACTCAGCCGGGTCCCTGGAACGCGTTTT
66 ATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGGG-CCCTGGAACGCGTTTT
* * * * * **
795 TAGCCGAAAATTTTGTTAGTCAGCACACGATTTCGGTCAAGATTTTGCAAAAATCCACCCGAATG
130 TAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATG
* * *
860 ATTTTCCCTCAATTTTTGGCAAAAATACTCATAAAAAATATATAAATCATTGCCAAAAGAATTGA
195 ATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCGCCAAAA-AATTGA
* * * ** *
925 AGGGTTTTTCACGCTTCGAATATC-ATTTTCCTAGGCTTTTCCGAATTAATTTCCTATTAAATCG
259 AGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCCAATTAAATCG
989 AAACTGGA
324 AAACTGGA
* * *
997 TTCTGATGCTCGTAAAAACAAATCTTTAAATCTTACGTGGCTGAGATTTCGGTAGATGAATATAG
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTAGATGAATATAG
* * * **
1062 ATATTCCAAGGAGTCTTGGCGCAAAAAATCATACAAAACTGAGCCAGGGCCCCGGAACGCCCTTT
66 ATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-GGGCCCTGGAACGCGTTTT
* * * * ** *
1127 TAGACGAAAACTGTGATGGTTAGCACACAATTTCGGTCAACAATTTGCAAACGTTGACCCGAAAG
130 TAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATG
* * * *
1192 ATTTTTCCTAAATTTTTAGCCAAAATACTCATAAAAAATATATGAATCATCGCCAAAAAGTTAGA
195 ATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCGCCAAAAAATT-GA
*
1257 AGGGTTTTTAAAGCTTCGAATATTGTTTTTCCTATACTTTTCCGAATTAATTTCCAATTAAATCG
259 AGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCCAATTAAATCG
1322 AAACTGGA
324 AAACTGGA
* * * *
1330 TTATGATGCTCGTAAAAAAAAAAATCTTCAAATCATATGTGGCTGAGATTTAGGTAGATGAATAT
1 TTCTGATGCTCGT--AAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTAGATGAATAT
* * * *
1395 AGATATTCAAAGGAGTGTTGGCGCCAAAAATCATACAAAACTGAGACGGAGCCCCGGAACGTGTT
64 AGATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGG-GCCCTGGAACGCGTT
* * * *
1460 TTTAGCCGAAAATTGTGATAGTTAGTACACGATTTCGGTCAAGATTTTGCAAAAATTCACCCGAA
128 TTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAA
* * *
1525 TGATTTTTCCTCAATTTTTTGCCAAAAAAACTCATAAAAAATATATAAATCATAGCCAAAAAGAT
193 TGATTTTTCCTCAATTTTTGGCC-AAAATACTCATAAAAAATATATAAATCATCGCCAAAAA-AT
* * *** * *
1590 TGAAGGGTTTTTAAAGATTTGAATATCG-TTTGAATAATATTTTTCCGAATGAATTTCCAATTAA
256 TGAAGGGTTTTTAAAGCTTCGAATATCGTTTTTCCT-ATACTTTTCCGAATTAATTTCCAATTAA
* *
1654 ATCAAAACTGAA
320 ATCGAAACTGGA
* * * * * * *
1666 TTGTTATGCTTGTAAAAACAAATTTTTAAATAATATGTGGCTGAGATTAGGGCAGATGAATATAG
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTAGATGAATATAG
* * *
1731 ATATTTAAAGGAGTCTTGACGCCAAAAATCATACAAAACTGAGCCAGGGCCCTGGAACGCCTTTT
66 ATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-GGGCCCTGGAACGCGTTTT
* * *
1796 TAGCCGAAAACTGTGATGGTTTGCACACAATTTCGGTCAAGATTTTGCAAAAATTGACCTGAATG
130 TAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATG
* * *
1861 ATTTTTCCTCAATTTTTAGCCAAAATATTCTTAAAATAA-ATAT--ATCA-CGGCCAAAAAGATT
195 ATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAA-AATATATAAATCATC-GCCAAAAA-ATT
* *
1922 GAAAGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATATTTTTCCGAATTAATTTCCAATTAAAT
257 GAAGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCCAATTAAAT
* *
1987 CAAAACTGAA
322 CGAAACTGGA
* * * * *
1997 TTCTCATGCTTGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTAGGATAGATGAATATAG
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTAGATGAATATAG
** * * * * * * * * *
2062 ATATTCCTAGAAGTCTTAGCGCCATAAATAATACAAAACTAAGCCGAGACCCTGAAACACATTTT
66 ATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCG-GGCCCTGGAACGCGTTTT
*
2127 TAGCTGAAAACTGTGAT-GTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATG
130 TAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATG
* * * *
2191 ATTTTTCAT-AAATTTTGGCAAAAATACTCATAAAAAATATATAAATCATAGCCAAAAATATTGT
195 ATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCGCCAAAAA-ATTG-
*
2255 CAAGATTTTGCTTGACCCGAATGATCGTAAAGGGTTTTTAAAGCTTCGAATATCGTTTGTTCCTA
258 --A-A--------G----G---G-T--T------TTTA--AAGCTTCGAATATCGTTT-TTCCTA
*
2320 TAGTTTTCCGAATTAATTTCCAATTAAATCGAAACTGGA
293 TACTTTTCCGAATTAATTTCCAATTAAATCGAAACTGGA
* *
2359 TTCTGATGCTCTTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGCAGATGAATATAG
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTAGATGAATATAG
* * * *
2424 ATATTCAAAGGAGTCTTGTCGCGAAAAATCATACAAAACTGAGTCTGGGCCCTGGAACGTGTTTT
66 ATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAG-CCGGGCCCTGGAACGCGTTTT
*
2489 TAGCCGAAAA-T-TG-T-G---GCACACGATTTCGGTCAAGATTTTGCAAAAATTCA-CCGAATG
130 TAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATG
* * *
2546 ATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAGATATATAAATCATGGCAAAAAAAATTGA
195 ATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCGC-CAAAAAATTGA
* * * * * *
2611 AGGGTTTTTCACA-CTTCAAATATCGTTTTTCCTATGCTTTTCCTATTTAATTTCCTATTAAATC
259 AGGGTTTTT-AAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCCAATTAAATC
2675 GAAACTGGA
323 GAAACTGGA
* ** * *
2684 TTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATAAGGCTGAGATTTGCGTAGATGAATATAT
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTAGATGAATATAG
* * * * * * *
2749 ATATTCCAAGGAGTTTTGGCACAAAAAATCATACAAAACAGAGCCGGGGCCCCGGAACGCATTTT
66 ATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-GGGCCCTGGAACGCGTTTT
** * * *
2814 TAGCTTAAAACTGTGATGGTT-TCACATGATTTCGGTCAAGATTTTGAAAAAA
130 TAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAA
2866 A
Statistics
Matches: 2185, Mismatches: 282, Indels: 133
0.84 0.11 0.05
Matches are distributed among these distances:
324 1 0.00
325 159 0.07
326 15 0.01
327 3 0.00
328 6 0.00
329 26 0.01
330 53 0.02
331 431 0.20
332 420 0.19
333 307 0.14
334 184 0.08
335 182 0.08
336 106 0.05
337 3 0.00
340 1 0.00
344 1 0.00
347 1 0.00
350 1 0.00
351 1 0.00
352 1 0.00
353 2 0.00
355 15 0.01
356 77 0.04
357 5 0.00
359 5 0.00
360 2 0.00
361 19 0.01
362 156 0.07
363 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (331 bp):
TTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTAGATGAATATAG
ATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGGGCCCTGGAACGCGTTTTT
AGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATGA
TTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCGCCAAAAAATTGAAG
GGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCCAATTAAATCGAA
ACTGGA
Found at i:1288 original size:665 final size:666
Alignment explanation
Indices: 1--2865 Score: 3627
Period size: 665 Copynumber: 4.3 Consensus size: 666
*
1 TTCTGATGCTCGTAAATACAAATCTTTAAATCTTATGTGGCTGAGATTTGGGTAGATGAATATAG
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTTGGGTAGATGAATATAG
* * * * *
66 ATATTCCAAGGAGTCTTGGAGAAAAAAATCTTACAAAACTGAG-CGGAGGCCCCGAAACGCCTTT
66 ATATTCCAAGGAGTCTTGGCGCAAAAAATCATACAAAACTGAGCCGG-GGCCCCGGAACGCATTT
* * * * *
130 TTAGACGAAAACTGTGATGGTTAGCACACGATTTCGGTCAATAATTTGCAAAAATTGACCCGAAT
130 TTAGCCGAAAACTGTGATAGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTCACCCGAAT
* * * * *
195 GATTTTTCCTAAATTTTTAGCCAAAATACTCAT-AAAAATATATGAATCATCGCCAAGAAG-ATT
195 GATTTTTCCTCAATTTTTGGCAAAAATACTCATAAAAAATATATAAATCATTGCCAAGAAGAATT
*
258 GAAGGGTTTTTAGAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATGAATTTCCAATTAAAT
260 GAAGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATGAATTTCCAATTAAAT
* ** *
323 CGAAACTGGATTATGATGCTCGTAAAAA-AAATCTCCAAATCATATGTGGCTGAGATTTAGGCAG
325 CGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGCAG
* * * * *
387 GTGAATATAGGTATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTAAGCCGGGGACCTGG
390 ATGAATATAGATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCAGGGCCCTGG
* * * *
452 AACGCGTTTTTAGCCGAAAACTGTAATGGTTAGTACACGATTTCGGTCAAGATTTTGCAAAAATT
455 AACGCCTTTTTAGCCGAAAACTGTGATGGTTAGCACACAATTTCGGTCAAGATTTTGCAAAAATT
* *
517 GACCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCA
520 GACCCGAATGATTTTTCCTCAATTTTTAGCCAAAATACTCATAAAAAATATATAAATCATCGCC-
* *
582 AAAAAATTGAAGGGTTTTTAAAGCTTCGAATATCATTTTTCCTATATTTTTCCGAATTAATTTCC
584 AAAAAATTGAAGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCC
647 AATTAAATCGAAACTGGA
649 AATTAAATCGAAACTGGA
* * * * *
665 TTCTCATGCTTGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGTGGATGAATTTAG
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTTGGGTAGATGAATATAG
* * * * * *
730 ATATTCAAAGGAGTCTTGGCGCTAAAAATCATACAAAACTCAGCCGGGTCCCTGGAACGCGTTTT
66 ATATTCCAAGGAGTCTTGGCGCAAAAAATCATACAAAACTGAGCCGGGGCCCCGGAACGCATTTT
* * * * *
795 TAGCCGAAAATTTTGTTAGTCAGCACACGATTTCGGTCAAGATTTTGCAAAAATCCACCCGAATG
131 TAGCCGAAAACTGTGATAGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTCACCCGAATG
*
860 ATTTTCCCTCAATTTTTGGCAAAAATACTCATAAAAAATATATAAATCATTGCCAA-AAGAATTG
196 ATTTTTCCTCAATTTTTGGCAAAAATACTCATAAAAAATATATAAATCATTGCCAAGAAGAATTG
* * * ** * *
924 AAGGGTTTTTCACGCTTCGAATATC-ATTTTCCTAGGCTTTTCCGAATTAATTTCCTATTAAATC
261 AAGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATGAATTTCCAATTAAATC
* * * *
988 GAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTACGTGGCTGAGATTTCGGTAGA
326 GAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGCAGA
* * *
1053 TGAATATAGATATTCCAAGGAGTCTTGGCGCAAAAAATCATACAAAACTGAGCCAGGGCCCCGGA
391 TGAATATAGATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCAGGGCCCTGGA
* * * * **
1118 ACGCCCTTTTAGACGAAAACTGTGATGGTTAGCACACAATTTCGGTCAACAATTTGCAAACGTTG
456 ACGCCTTTTTAGCCGAAAACTGTGATGGTTAGCACACAATTTCGGTCAAGATTTTGCAAAAATTG
* * *
1183 ACCCGAAAGATTTTTCCTAAATTTTTAGCCAAAATACTCATAAAAAATATATGAATCATCGCCAA
521 ACCCGAATGATTTTTCCTCAATTTTTAGCCAAAATACTCATAAAAAATATATAAATCATCGCCAA
* *
1248 AAAGTTAGAAGGGTTTTTAAAGCTTCGAATATTGTTTTTCCTATACTTTTCCGAATTAATTTCCA
586 AAAATT-GAAGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCCA
1313 ATTAAATCGAAACTGGA
650 ATTAAATCGAAACTGGA
* * * * *
1330 TTATGATGCTCGTAAAAAAAAAAATCTTCAAATCATATGTGGCTGAGATTTAGGTAGATGAATAT
1 TTCTGATGCTCGT--AAAAACAAATCTTTAAATCTTATGTGGCTGAGATTTGGGTAGATGAATAT
* * * * * **
1395 AGATATTCAAAGGAGTGTTGGCGCCAAAAATCATACAAAACTGAGACGGAGCCCCGGAACGTGTT
64 AGATATTCCAAGGAGTCTTGGCGCAAAAAATCATACAAAACTGAGCCGGGGCCCCGGAACGCATT
* *
1460 TTTAGCCGAAAATTGTGATAGTTAGTACACGATTTCGGTCAAGATTTTGCAAAAATTCACCCGAA
129 TTTAGCCGAAAACTGTGATAGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTCACCCGAA
* * * *
1525 TGATTTTTCCTCAATTTTTTGCCAAAAAAACTCATAAAAAATATATAAATCATAGCCAAAAAG-A
194 TGATTTTTCCTCAA-TTTTTGGCAAAAATACTCATAAAAAATATATAAATCATTGCCAAGAAGAA
* * *** *
1589 TTGAAGGGTTTTTAAAGATTTGAATATCG-TTTGAATAATATTTTTCCGAATGAATTTCCAATTA
258 TTGAAGGGTTTTTAAAGCTTCGAATATCGTTTTTCCT-ATACTTTTCCGAATGAATTTCCAATTA
* * * * * * * *
1653 AATCAAAACTGAATTGTTATGCTTGTAAAAACAAATTTTTAAATAATATGTGGCTGAGATTAGGG
322 AATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGG
* *
1718 CAGATGAATATAGATATTTAAAGGAGTCTTGACGCCAAAAATCATACAAAACTGAGCCAGGGCCC
387 CAGATGAATATAGATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCAGGGCCC
*
1783 TGGAACGCCTTTTTAGCCGAAAACTGTGATGGTTTGCACACAATTTCGGTCAAGATTTTGCAAAA
452 TGGAACGCCTTTTTAGCCGAAAACTGTGATGGTTAGCACACAATTTCGGTCAAGATTTTGCAAAA
* * *
1848 ATTGACCTGAATGATTTTTCCTCAATTTTTAGCCAAAATATTCTTAAAATAA-ATAT--ATCA-C
517 ATTGACCCGAATGATTTTTCCTCAATTTTTAGCCAAAATACTCATAAAA-AATATATAAATCATC
* *
1909 GGCCAAAAAGATTGAAAGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATATTTTTCCGAATTAA
581 -GCCAAAAA-ATTGAAGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAA
* *
1974 TTTCCAATTAAATCAAAACTGAA
644 TTTCCAATTAAATCGAAACTGGA
* * * *
1997 TTCTCATGCTTGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTAGGATAGATGAATATAG
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTTGGGTAGATGAATATAG
* * * * * * * * * * * *
2062 ATATTCCTAGAAGTCTTAGCGCCATAAATAATACAAAACTAAGCCGAGACCCTGAAACACATTTT
66 ATATTCCAAGGAGTCTTGGCGCAAAAAATCATACAAAACTGAGCCGGGGCCCCGGAACGCATTTT
* *
2127 TAGCTGAAAACTGTGAT-GTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATG
131 TAGCCGAAAACTGTGATAGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTCACCCGAATG
* * *
2191 ATTTTTCAT-AAATTTTGGCAAAAATACTCATAAAAAATATATAAATCATAGCCAAAAATATTGT
196 ATTTTTCCTCAATTTTTGGCAAAAATACTCATAAAAAATATAT-AA--AT---C------ATTGC
2255 CAAGATTTTGCTTGACCCGAATGATCGTAAAGGGTTTTTAAAGCTTCGAATATCGTTTGTTCCTA
249 CAAGA---------A---GAAT--T-G--AAGGGTTTTTAAAGCTTCGAATATCGTTT-TTCCTA
* * *
2320 TAGTTTTCCGAATTAATTTCCAATTAAATCGAAACTGGATTCTGATGCTCTTAAAAACAAATCTT
296 TACTTTTCCGAATGAATTTCCAATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTT
* *
2385 TAAATCATATGTGGCTGAGATTTGGGCAGATGAATATAGATATTCAAAGGAGTCTTGTCGCGAAA
361 TAAATCATATGTGGCTGAGATTTGGGCAGATGAATATAGATATTCAAAGGAGTCTTGGCGCCAAA
* * **
2450 AATCATACAAAACTGAGTCTGGGCCCTGGAACGTGTTTTTAGCCGAAAA-T-TG-T-G---GCAC
426 AATCATACAAAACTGAGCCAGGGCCCTGGAACGCCTTTTTAGCCGAAAACTGTGATGGTTAGCAC
* * *
2508 ACGATTTCGGTCAAGATTTTGCAAAAATTCA-CCGAATGATTTTTCCTCAATTTTTGGCCAAAAT
491 ACAATTTCGGTCAAGATTTTGCAAAAATTGACCCGAATGATTTTTCCTCAATTTTTAGCCAAAAT
* * * * *
2572 ACTCATAAAAGATATATAAATCATGGCAAAAAAAATTGAAGGGTTTTTCACA-CTTCAAATATCG
556 ACTCATAAAAAATATATAAATCATCGC-CAAAAAATTGAAGGGTTTTT-AAAGCTTCGAATATCG
* * * *
2636 TTTTTCCTATGCTTTTCCTATTTAATTTCCTATTAAATCGAAACTGGA
619 TTTTTCCTATACTTTTCCGAATTAATTTCCAATTAAATCGAAACTGGA
** * *
2684 TTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATAAGGCTGAGATTTGCGTAGATGAATATAT
1 TTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTTGGGTAGATGAATATAG
* * *
2749 ATATTCCAAGGAGTTTTGGCACAAAAAATCATACAAAACAGAGCCGGGGCCCCGGAACGCATTTT
66 ATATTCCAAGGAGTCTTGGCGCAAAAAATCATACAAAACTGAGCCGGGGCCCCGGAACGCATTTT
** * * * *
2814 TAGCTTAAAACTGTGATGGTT-TCACATGATTTCGGTCAAGATTTTGAAAAAA
131 TAGCCGAAAACTGTGATAGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAA
2866 A
Statistics
Matches: 1896, Mismatches: 252, Indels: 83
0.85 0.11 0.04
Matches are distributed among these distances:
662 28 0.01
663 4 0.00
664 316 0.17
665 444 0.23
666 1 0.00
667 267 0.14
668 73 0.04
669 244 0.13
670 2 0.00
674 7 0.00
683 1 0.00
684 1 0.00
685 43 0.02
686 34 0.02
687 224 0.12
688 10 0.01
689 2 0.00
690 2 0.00
691 2 0.00
692 25 0.01
693 164 0.09
694 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (666 bp):
TTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTTGGGTAGATGAATATAG
ATATTCCAAGGAGTCTTGGCGCAAAAAATCATACAAAACTGAGCCGGGGCCCCGGAACGCATTTT
TAGCCGAAAACTGTGATAGTTAGCACACGATTTCGGTCAAGATTTTGCAAAAATTCACCCGAATG
ATTTTTCCTCAATTTTTGGCAAAAATACTCATAAAAAATATATAAATCATTGCCAAGAAGAATTG
AAGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATGAATTTCCAATTAAATC
GAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCATATGTGGCTGAGATTTGGGCAGA
TGAATATAGATATTCAAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCAGGGCCCTGGA
ACGCCTTTTTAGCCGAAAACTGTGATGGTTAGCACACAATTTCGGTCAAGATTTTGCAAAAATTG
ACCCGAATGATTTTTCCTCAATTTTTAGCCAAAATACTCATAAAAAATATATAAATCATCGCCAA
AAAATTGAAGGGTTTTTAAAGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCCAA
TTAAATCGAAACTGGA
Done.