Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014926.1 Corchorus olitorius cultivar O-4 contig14959, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83583

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2254
333
6.8
333
89
2
3362
35
16
16
31
1.91
1--2254
657
3.4
660
90
3
3427
35
16
16
31
1.91
11101--11137
10
3.8
10
89
3
58
83
8
8
0
0.80
20564--20716
49
3.1
49
64
23
122
51
18
6
22
1.69
20547--20740
98
2.0
98
97
0
370
50
20
6
22
1.71
26386--26410
7
3.6
7
100
0
50
44
0
16
40
1.47
32384--32439
6
9.2
6
80
20
55
0
17
0
82
0.68
34277--34319
22
2.0
22
86
4
61
58
6
6
27
1.50
37825--37853
1
29.0
1
100
0
58
0
0
0
100
0.00
46748--46777
2
15.0
2
100
0
60
50
0
0
50
1.00
60028--60063
6
6.0
6
100
0
72
33
16
50
0
1.46
63842--63926
42
2.0
43
86
2
118
23
11
20
44
1.84
64714--64760
25
1.9
24
91
4
76
12
6
31
48
1.66
83203--83245
21
2.0
21
86
0
59
18
46
6
27
1.75

Tables:   1

The End!