Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014928.1 Corchorus olitorius cultivar O-4 contig14961, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 122413
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:609 original size:2 final size:2
Alignment explanation
Indices: 602--628 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
592 TTGAAGATAC
602 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
629 CCCTAGAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10986 original size:26 final size:26
Alignment explanation
Indices: 10937--10989 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10927 AATATAGTTT
* *
10937 GATTTGATATGAATTTTTTTTATAAA
1 GATTTGATATGAATTTTATATATAAA
10963 GATTTGATATG-ATTATTATATATAAA
1 GATTTGATATGAATT-TTATATATAAA
10989 G
1 G
10990 TTTAAAGGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (26 bp):
GATTTGATATGAATTTTATATATAAA
Found at i:29737 original size:32 final size:32
Alignment explanation
Indices: 29675--29736 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
29665 GGTATATTAA
*
29675 GCTAGTCTTCCATAGTGGCCAAAAAAAAAAAT
1 GCTAGTCTTCCATAGTGGCAAAAAAAAAAAAT
*
29707 GCTAGTCTTCCATAGT-TCAAAAAAAAAAAA
1 GCTAGTCTTCCATAGTGGCAAAAAAAAAAAA
29737 ACCAAAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 12 0.43
32 16 0.57
ACGTcount: A:0.47, C:0.18, G:0.13, T:0.23
Consensus pattern (32 bp):
GCTAGTCTTCCATAGTGGCAAAAAAAAAAAAT
Found at i:32328 original size:1 final size:1
Alignment explanation
Indices: 32317--32350 Score: 59
Period size: 1 Copynumber: 34.0 Consensus size: 1
32307 ATAGGGCCTG
*
32317 TTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
32351 CAAGTGAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:50129 original size:20 final size:20
Alignment explanation
Indices: 50104--50145 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
50094 TTTAGTACGG
50104 GTCATATAGTCT-CATATTCA
1 GTCATATAGT-TGCATATTCA
50124 GTCATATAGTTGCATATTCA
1 GTCATATAGTTGCATATTCA
50144 GT
1 GT
50146 AGTTGCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (20 bp):
GTCATATAGTTGCATATTCA
Found at i:50150 original size:15 final size:15
Alignment explanation
Indices: 50130--50188 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
50120 TTCAGTCATA
50130 TAGTTGCATATTCAG
1 TAGTTGCATATTCAG
50145 TAGTTGCATATTCAG
1 TAGTTGCATATTCAG
*
50160 TA-TGGC-TCA-T-A-
1 TAGTTGCAT-ATTCAG
50171 TAGTTGCATATTCAG
1 TAGTTGCATATTCAG
50186 TAG
1 TAG
50189 GAGCTCATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
11 2 0.06
12 5 0.14
13 4 0.11
14 5 0.14
15 20 0.56
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (15 bp):
TAGTTGCATATTCAG
Found at i:50175 original size:26 final size:26
Alignment explanation
Indices: 50145--51328 Score: 1616
Period size: 26 Copynumber: 45.2 Consensus size: 26
50135 GCATATTCAG
*
50145 TAGTTGCATATTCAGTATGGCTCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
50171 TAGTTGCATATTCAGTAGGAGCTCATA
1 TAGTTGCATATTCAGTAGG-GCTCATA
50198 TAGTTGCATATTCAGTAAGGGCTCATA
1 TAGTTGCATATTCAGT-AGGGCTCATA
50225 TAGTTGCATATTCAGTAGGGCTCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
*
50251 TAGTTGCATATTCAGTAGGGGC-CTTA
1 TAGTTGCATATTCAGTA-GGGCTCATA
50277 TAGTTGCATATTCAGTAGGGCTCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
50303 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
*
50329 TAGTTGCATATTCAGTAGGGCGCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
*
50355 TAGTTGCATATGCAGTAGGCGC-CATA
1 TAGTTGCATATTCAGTAGG-GCTCATA
*
50381 TAGTTGCATATCCAGTAGGGGCT-ATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
*
50407 TAGTTGCATATTCAGTAGGGCTCATG
1 TAGTTGCATATTCAGTAGGGCTCATA
*
50433 TAGTTGCATATTCAGTAGGGCTCATG
1 TAGTTGCATATTCAGTAGGGCTCATA
*
50459 TAGTTGCATATTCAGTAGGGCTCATG
1 TAGTTGCATATTCAGTAGGGCTCATA
50485 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
50511 TAGTTGCATATTCAGTAGGGC-CATA
1 TAGTTGCATATTCAGTAGGGCTCATA
50536 TAGTTGCATATTCAGTAGGGCTCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
50562 TAGTTGCATATTCAGTAGGGCTCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
*
50588 TAGATGCATATTCAGTAGGGCTCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
*
50614 TAGTTGCATATTCAGTAGGTCTCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
50640 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
50666 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
50692 TAGTTGCATATTCAGTAGGGGCAGGCTCATA
1 TAGTTGCATATTCAGTA---G--GGCTCATA
50723 TAGTTGCATATTCAGTATGGGCGGGCTCATA
1 TAGTTGCATATTCAGTA-----GGGCTCATA
50754 TAGTTGCATATTCAGTAGGGGCGGCTCATA
1 TAGTTGCATATTCAGTA---G-GGCTCATA
50784 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
*
50810 TAGTTGCATATTCAGTAGGGCGCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
*
50836 TAGTTGCATATTCATTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
*
50862 TAGTTGCATATTCAGAAGGAGC-CATA
1 TAGTTGCATATTCAGTAGG-GCTCATA
**
50888 TAAATGCATATTCAGTAGGAGC-CATA
1 TAGTTGCATATTCAGTAGG-GCTCATA
** * *
50914 TAAATGCATATTCAGTAGGGCTTATG
1 TAGTTGCATATTCAGTAGGGCTCATA
50940 TAGTTGCATATTCAGTAGGGCTCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
50966 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
50992 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
51018 TAGTTGCATATTCAGTAGGGGCTCATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
*
51045 TAGTTGC-TCA-T-A-TAGGGGTCATA
1 TAGTTGCAT-ATTCAGTAGGGCTCATA
51068 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
51094 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
* *
51120 TAGTTGCATATTCAGTAGGGCTTATG
1 TAGTTGCATATTCAGTAGGGCTCATA
51146 TAGTTGCATATTCAGTAGGGCTCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
51172 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
51198 TAGTTGCATATTCAGTAGGGGC-C--A
1 TAGTTGCATATTCAGTA-GGGCTCATA
51222 TA--TGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
51246 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
51272 TAGTTGCATATTCAGTAGGGGC-CATA
1 TAGTTGCATATTCAGTA-GGGCTCATA
*
51298 TAGTTGCATATTCAGTAGTGCTCATA
1 TAGTTGCATATTCAGTAGGGCTCATA
51324 TAGTT
1 TAGTT
51329 AGCAGCATGA
Statistics
Matches: 1085, Mismatches: 33, Indels: 80
0.91 0.03 0.07
Matches are distributed among these distances:
22 19 0.02
23 16 0.01
24 10 0.01
25 59 0.05
26 799 0.74
27 95 0.09
28 7 0.01
29 3 0.00
30 28 0.03
31 46 0.04
33 3 0.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGTTGCATATTCAGTAGGGCTCATA
Found at i:51897 original size:272 final size:271
Alignment explanation
Indices: 51409--51954 Score: 810
Period size: 272 Copynumber: 2.0 Consensus size: 271
51399 AATTGAGTCG
* ** * *
51409 GGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTGTTACATCACGGTTTTTGGCTAAAAAT
1 GGTCAGTTTTTACAAAATTTTAGCAAAAATCGTATAC-GTAACATCACGGTTTTTGGCTAAAAAC
* *
51474 GAGTTTTGGGGCCCCGACTTAGTTTTGGCTGATTTTTGGCGCCAAGACTCATTGACATATCTATA
65 GAGTTTGGGGGCCCCGACTTAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATA
*
51539 TTCATCTAAACAAATCCCAACCATATTGGATTCAAGGATTTGTTTTTACGAGAATTCGAAACAAA
130 TTCATCTAAACAAATCCCAACCACATTGGATTCAAGGATTTGTTTTTACGAGAATTCGAAACAAA
* * * *
51604 TTTCGATTTAATTAGAAATTGATTCGGAAAAAAATGGAAAAACGATATTTGAAGCATAAAAAGCC
195 TTTCGATTTAATTAAAAATTGATTCGG-AAAAAACGGAAAAACGATATTAGAAACATAAAAAGCC
51669 CTTCAATCATTTT
259 CTTCAATCATTTT
51682 GGTCAGTTTTTACAAAATTTTAGCAAAAATCGTATAC-TAACAATCACGGTTTTTGGCTAAAAAC
1 GGTCAGTTTTTACAAAATTTTAGCAAAAATCGTATACGTAAC-ATCACGGTTTTTGGCTAAAAAC
*
51746 GTGTTTGGGGGCCCCGA-TTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTAT
65 GAGTTTGGGGGCCCCGACTT-AGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTAT
* * * * * * *
51810 TTTCAGT-TACACAAATCTCAACTACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGAAACA
129 ATTCA-TCTAAACAAATCCCAACCACATTGGATTCAAGGATTTGTTTTTACGAGAATTCGAAACA
* *
51874 AATTTCGATTTAATTAAAAATTGATTCGGAAAAAACGGAAAAACGATATTAGAAACTTGAAAAGC
193 AATTTCGATTTAATTAAAAATTGATTCGGAAAAAACGGAAAAACGATATTAGAAACATAAAAAGC
* *
51939 CCTTTAATTATTTT
258 CCTTCAATCATTTT
51953 GG
1 GG
51955 CATTTAATTA
Statistics
Matches: 246, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
271 50 0.20
272 161 0.65
273 35 0.14
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (271 bp):
GGTCAGTTTTTACAAAATTTTAGCAAAAATCGTATACGTAACATCACGGTTTTTGGCTAAAAACG
AGTTTGGGGGCCCCGACTTAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATAT
TCATCTAAACAAATCCCAACCACATTGGATTCAAGGATTTGTTTTTACGAGAATTCGAAACAAAT
TTCGATTTAATTAAAAATTGATTCGGAAAAAACGGAAAAACGATATTAGAAACATAAAAAGCCCT
TCAATCATTTT
Found at i:54533 original size:323 final size:322
Alignment explanation
Indices: 51679--58107 Score: 8867
Period size: 323 Copynumber: 20.1 Consensus size: 322
51669 CTTCAATCAT
* * *
51679 TTTGGTCAGTTTTTACAAAATTTTAGCAAAAATCGTATACTAACAATCACGGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * *
51744 ACGTGTTTGGGGGCCCCGATTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* * * *
51809 TTTTCAGT-TACACAAATCTCAACTACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGAAAC
131 TATTCA-TCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAAC
* * * *
51873 AAATTTCGATTTAATTAAAAATTGATTCGGAAAAAACGGAAAAACGATATTAGAAACTTGAAAAG
195 AAATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
* * *
51938 CCCTTTAATTATTTTGGCATTTAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
260 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
52001 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
** * *
52066 AC-CTGTTTAAGGGACCCGACTCAGTTGTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCT
66 ACGC-GTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCT
* * * *
52130 ATTTTCATCTAAACAAGTCTCAACCACATTGGCTTTAATGATTTGTTTTTACGAGCATCTGAAAC
130 ATATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAAC
* * * *
52195 CAATTTCGATTTAATTAGAAATTGATACGGAAAAAAAGGGAAAACGATATTAGAAGCATGAAAAG
195 AAATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
* *
52260 -TCTTACAATCATTTTGGCATTGAATTACATAATTTTTTTATGAGTATTTTAGCCAGAAATTGAG
260 CCCTT-CAATCATTTTGGCATTGAATTACAT-ATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
** * *
52324 TCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCG--TA-T-----TCACTGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * *
52381 ACGCGTTCCGGGACCCCGACTCAGTTTTGGCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* * * *
52446 TATTCATCTAACCAAATCTCAACCACATTGAATATAAGGATTTGTTTTTACGAGCATCCGAAACA
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
*
52511 AATTTCGATTTGATTAGAAATTGATTCGGAAAAAAAAATGGAAAAACGATATTAGAAGCATGAAA
196 AATTTCGATTTAATTAGAAATTGATTCGG---AAAAAATGGAAAAACGATATTAGAAGCATGAAA
52576 AGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
258 AGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
52641 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * *
52706 ACGAGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTGATTGACATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* * * * *
52771 TTTTCAACTAAACAAATCTCAACTACATTGGATTTAATGATTTGTTTTTACGAGCATCTGAAACC
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
*
52836 AATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCTTGAAAAGC
196 AATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGC
* * * * *
52901 CCTTTAATTATTTTGGCATTTAATTACATATTTTTTTATGTGTATTTTAGATAGAAATTGAG
261 CCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
*
52963 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACT-A-CATCACTGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * * * * * *
53026 ATGCGTTCCGAGGCCCCGACTTAGTTTTGGCTGATTTTTGTCCCCAAGACTCATTGACATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* *
53091 TATTCATCTAAACAAATCTCAACCATACTGGATTTGAA-GATTTGTTTTTACGA--A--T-----
131 TATTCATCTAAACAAATCTCAACCACATTGGATTT-AAGGATTTGTTTTTACGAGCATCTGAAAC
53146 AAATTTCGATTTAATTAGAAATTGATTCGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAA
195 AAATTTCGATTTAATTAGAAATTGATTCGG-AAAAAATGGAAAAACGATATTAGAAGCATGAAAA
53211 GCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
259 GCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
53275 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* *
53340 ACGTGTTTAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* * * *
53405 TTTTCATCTAAACAAATCTCAACTACATTGGATTTAATGATTTGTTTTTACGAGCATCTGAAACC
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
*
53470 AATTTCGATTTAATTAGAAATTGATACGGAAAAAAATGG-AAAACGATATTAGAAGCATGAAAAG
196 AATTTCGATTTAATTAGAAATTGATTCGG-AAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
* * *
53534 CCCTACAATCATTTTGGCATTGAGTTACATATTTTTTTATGAGTATTTTAGCCAGAAATTGAG
260 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
** * *
53597 TCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCG---------CATCACTGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * * *
53653 ACGCGTTCCGGGACCCCGACTCAGTTTTGGCTGATTTTTTGCGCCAAGACTCATTGACATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* * * *
53718 TATTCATCTAACCAAATCTCAACCACATTGAATATAAGGATTTGTTTTTACGAGCATCCGAAACA
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
* *
53783 AATTTCGATTTGATTAGAAATTGATTCGGAAAAAAAAATGGAAAAACGATATTAGAAGCTTGAAA
196 AATTTCGATTTAATTAGAAATTGATTCGG---AAAAAATGGAAAAACGATATTAGAAGCATGAAA
*
53848 AGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGTGTATTTTAGCTAGAAATTGAG
258 AGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
53913 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACTGGTTTTTGGCTAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCAC-GGTTTTTGGCTAAA
*
53978 AACGCG-TTCAAGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATC
65 AACGCGTTTC-GGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATC
* *
54042 TATATTCATCTAAACAAATCTCAACCATATTGGATTTAAGGATTTGTTTTTACGAGCATCCGAAA
129 TATATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAA
54107 CAAATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCATGAAAA
194 CAAATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCATGAAAA
54172 GCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
259 GCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
54236 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* ** * *
54301 ACGTGTTTAAGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCTTTAACATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
*
54366 TTTTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT-AAATC
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAA-C
* * *
54430 CAATTTCGATTTAATTAGAAATTGATACGGAAAAAATGGAAAAACGATATTAGTAGCATGAAAAG
195 AAATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
* *
54495 CACTTCAATCATTTTGGCATTGAATTACATATTTTTTTTATGAGTA---T-G--AG---TCGA-
260 CCCTTCAATCATTTTGGCATTGAATTACATA-TTTTTTTATGAGTATTTTAGCTAGAAATTGAG
* * * * *
54549 ----GTAAGTTTTTGCAAGATTTTAGCCGAAATCGTATACTAACCATCACTGTTTTTGGTTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * **
54610 ACGCGTTCCGGGGCCCCGACTCAGTTTTGGCTGATTTTTGGCGCCAAGACAAATTGACATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* *
54675 TATTCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
*
54740 AATTTCGATTTAATTAAAAATTGATTCGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
196 AATTTCGATTTAATTAGAAATTGATTCGG-AAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
54805 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
260 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
*
54868 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACAATCACGGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * *
54933 ACGCGTTCCGGGGCTCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGATTCATTGACATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* * *
54998 TATTCATCCAAACAAATCTCAACCACATTGGATTTAAGGATTTGATTTTACGAGTATCTGAAACA
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
* * * *
55063 AATTTCGAGTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTTGAAGCATGAAAAT
196 AATTTCGATTTAATTAGAAATTGATTCGG-AAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
* * *
55128 CTCTTCAATCATTTTGGCATTGAATTACAAATTTTTTTATGAGTATTTTAGCCAGAAATTGAG
260 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
* * * *
55191 -TCGAGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACAGTTTTTGGCTAAA
1 TTTG-GTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAA
* * * * *
55255 AACGTGTTTAGGGGCCCCGGCTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCC
65 AACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCT
* *
55320 ATATTCATC-AAACCAAATCTCAACCACATTGGATTTAAGTATGTGTTTTTACGAGCATCTGAAA
130 ATATTCATCTAAA-CAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAA
* * * * * *
55384 CCAATTTCGATTTAAGTAGAAATTTATTCGAAAAAAATGGAAAAACGATTTTAGAAGCATGAGAA
194 CAAATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCATGAAAA
* * * * * *
55449 GCCCTTCAATCATGTGGGCATTGAATTACATA-ATTTTTATTAGTATTTCAG-TAAAAAATTGAG
259 GCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCT-AGAAATTGAG
* * * * * *
55512 -TCGGATCCGTTTTTGCAAAATTTTAGCCGAAATTGTATATTAATCATCACGGTTTTTGGCTAAA
1 TTTGG-TCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAA
* * * * * * *
55576 AAAGCG-TTCAGGAGCCCTGGCTCAGTTTTGCCTGATTTTTGGCTCCAAGACTAATTGAAATATC
65 AACGCGTTTC-GGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATC
* * * *
55640 TATATTCATCTAACCAAATCTCAACCACAATGAATTTAAGGATTTCTTTTTACGAGCATCTGAAA
129 TATATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAA
*
55705 C-AA-TTCGATTTAATTAAAAATTGATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCATGAA
194 CAAATTTCGATTTAATTAGAAATTGATTCGG--AAAAAATGGAAAAACGATATTAGAAGCATGAA
55768 AAGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGA
257 AAGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGA
55833 G
322 G
* **
55834 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAAACATCAATGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * * * * *
55899 ACGAGTTACGGGGCCCCGACTTAGTTTTGGCTGATTTTTGGCGCCAATATTCATTGACATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* * * *
55964 TATTCATCTAAACAAATCCCAACCATATTGGATTTAAGGATTTGTTTTTACGAGCTTCCGAAACA
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
* * *
56029 AATTTCGATTGAATTAGAAATTGATTCGGAAAAAAAGGGAAAAACGATATTAGGAGCATGAAAAG
196 AATTTCGATTTAATTAGAAATTGATTCGG-AAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
* * *
56094 CCCTTCAATCATTTTGGCATTGAATTACAAATTTTTTTATGAGTATTTCAGCTATAAATTGAG
260 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
*
56157 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACTGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * * *
56222 ACGCGTTCCGGGGCCCCGACTCAGTTTTGGCAGATTTTTGGCGCCAAGACTCATTGATATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* * * * *
56287 TATTCATCCAAACAAATCTCAACTACATTGTATTTAAGGATTTGTTTTTACGAGCATCTAAAATA
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
* * * * *
56352 AATTTCGAGTTAATTAGAAATTGATGCGAAAAAAATGGAAAAACGATATTTGAAGCATGAAAATC
196 AATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGC
* ** * *
56417 TCTTCAATCATTTTGGCATTGAATTACA-GCTTTTTTATGAGTATTTTAGCCATAAATTGAG
261 CCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
* * *
56478 TCAT-GTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACGGTTTTTGGCTAAA
1 T-TTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAA
* * *
56542 AACGTGTTTAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAATACTCATTGACATATCT
65 AACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCT
* * * *
56607 ATTTTCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTCTACGAGCATCTGAAAC
130 ATATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAAC
*
56672 AAATTTCGATTTAATGT-GAAATTGATTCGGAAAAAAATGGGAAAACGATATTAGAAGCATGAAA
195 AAATTTCGATTTAAT-TAGAAATTGATTCGG-AAAAAATGGAAAAACGATATTAGAAGCATGAAA
* * * *
56736 ATCCCTTCAATAATTTTGGCATTGAATTGCATATTTTTTTATGAGTATTTTAGCTAAAAATTGAG
258 AGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
* * *
56801 TTTTGTCAGTTTTTGCAAAATTTTAGCCGAAATCGCATACTAACCATCACGGTTTTTGGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * *
56866 ACGCGTTCCGTGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* * *
56931 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAAGATTTATTTTTACAAGCATCTGAAACA
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
* * * ** * * *
56996 AATTTCAATTTAATTAGAAATTGATACAGAAAAAAATGGAAAATTGATCTTTGAAGCATGAAAAA
196 AATTTCGATTTAATTAGAAATTGATTC-GGAAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
* *
57061 CTCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCCT-GAAATTCAG
260 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAG-CTAGAAATTGAG
* * * * *** *
57124 CTGGGTCAATTTTTGCAAAATTTTTGATGAAATCG--TA-T-A-CATCACGGTTTTTTGCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * * * * * * *
57184 ACGTGTTCCGAGGCCTCGGCTTAGTTTTGCCTGATTTTTGGCGCCGAGACTCATTGAAATATCTA
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
* * * * *
57249 TATTCATCTAACCAAATCTCAACCACGTTGGATTTAAGGATTTGTTTTGACGAGCA-CTGAATCT
131 TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
** * * ** * * *
57313 TGTTTCGATTTAATTAGAAATTAATACGGAAATAAGGGGAAAGACGACATTAGAAGCGTGAAAAG
196 AATTTCGATTTAATTAGAAATTGATTCGGAAA-AAATGGAAAAACGATATTAGAAGCATGAAAAG
* *** * * * * * * * * *
57378 CCCTTCAATCTTTTTGATGTTGAAGTATATA-ATTTTTATGAGTACTGTGGCCAAAAATTCAG
260 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
* * * * * ***
57440 -TCGGTTCAGTTTTTGCAAAATTTTAGCCAAAACCGTTTAC-AATCTATCATGGTTTTTTTTAAT
1 TTTGG-TCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAA-CCATCACGG--TTTTTGGCT
* * * ** * * *
57503 AAAAAAACGCGTTTCGGAGCCCCGATTTAGTTTTGATTGATTTTTGGCGCCTAGACTCCTTGAAA
62 --AAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACA
* * * ** * *
57568 TGTGTAAATTCATCTATCCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATTT
125 TATCTATATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT
* * * *
57633 GAAACCAATTTCGATTTAATTAGAAATTGATACGAAAAAAATGGAAAAACAATATTAGAAGCATG
190 GAAACAAATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCATG
*
57698 AAAAGCCCTTC-A--A-TTTGGCATTGAATTAAATA-TTTTTTATGAGTATTTTAGCTAGAAATT
255 AAAAGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATT
57758 GAG
320 GAG
** * ** *
57761 TCGGGTTAGTTTTTGCAAAATTTTAGCTGAAATCGTATACTAACCATCACGGTTTTTGTCTAAAA
1 TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
* * * * *
57826 CCGCGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTTCATTAAAATATTT
66 ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGAC-TCATTGACATATCT
* * *
57891 ATATTAATCT--ACTAAATCTCAACCACATTGGATTTAAGGATTAGTTTTTACGATCATCTGAAA
130 ATATTCATCTAAAC-AAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAA
* * * * *
57954 CCAATTTCGATTTAATTAGAAATTGATACGTAAAAAAATGGGAAAATGATATTAGAAGCATGAAA
194 CAAATTTCGATTTAATTAGAAATTGATTCG-GAAAAAATGGAAAAACGATATTAGAAGCATGAAA
*
58019 AGCCCTTCAATCATTTTGGCATTGAATTACATA-TTTTTT-TGAGTATTTTAGCTTGAAATTGAG
258 AGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
** *
58082 TCGGGCCAGTTTTTGCAAAATTTTAG
1 TTTGGTCAGTTTTTGCAAAATTTTAG
58108 GCTAAAAACG
Statistics
Matches: 5444, Mismatches: 554, Indels: 219
0.88 0.09 0.04
Matches are distributed among these distances:
309 210 0.04
310 67 0.01
311 29 0.01
312 134 0.02
313 167 0.03
314 125 0.02
315 173 0.03
316 170 0.03
317 263 0.05
318 251 0.05
319 37 0.01
320 131 0.02
321 625 0.11
322 1126 0.21
323 1405 0.26
324 28 0.01
325 310 0.06
326 193 0.04
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (322 bp):
TTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAA
ACGCGTTTCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTA
TATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
AATTTCGATTTAATTAGAAATTGATTCGGAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGC
CCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG
Found at i:56089 original size:966 final size:965
Alignment explanation
Indices: 51682--58431 Score: 9085
Period size: 966 Copynumber: 7.1 Consensus size: 965
51672 CAATCATTTT
* **
51682 GGTCAGTTTTTACAAAATTTTAGCAAAAATCGTATACTAA-CAATCACGGTTTTTGGCTAAAAAC
1 GGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATC-ATCACGGTTTTTGGCTAAAAAC
* ** * *
51746 GTGTTTGGGGGCCCCGATTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATT
65 GCGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATA
* * *
51811 TTCAGT-T-ACACAAATCTCAACTACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGAAACA
130 TTCA-TCTAAC-CAAATCTCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAACA
* * * *
51874 AATTTCGATTTAATTAAAAATTGATTCGG-AAAAAACGGAAAAACGATATTAGAAACTTGAAAAG
193 AATTTCGATTTAATTAGAAATTGATTCGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
* * *
51938 CCCTTTAATTATTTTGGCATTTAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTT
258 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTT
52003 TGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAAC
323 TGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAAC
*** * *
52068 -CTGTTTAAGGGACCCGACTCAGTTGTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTAT
388 GC-GTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTAT
* * * * *
52132 TTTCATCTAAACAAGTCTCAACCACATTGGCTTTAATGATTTGTTTTTACGAGCATCTGAAACCA
452 ATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACAA
*
52197 ATTTCGATTTAATTAGAAATTGATACGGAAAAAAA-GGGAAAACGATATTAGAAGCATGAAAAG-
517 ATTTCGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGC
* *
52260 TCTTACAATCATTTTGGCATTGAATTACATAATTTTTTTATGAGTATTTTAGCCAGAAATTGAGT
582 CCTT-CAATCATTTTGGCATTGAATTACAT-ATTTTTTTATGAGTATTTTAGCTAGAAATTGAGT
* *
52325 CGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCG--TA-T-----TCACTGTTTTTGGCTAAAAA
645 C-GGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAA
* * * * *
52382 CGCGTTCCGGGACCCCGACTCAGTTTTGGCTGATTTTTGGCGCCAAGACTCATTGACATATCTAT
709 CGTGTTCAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCTAT
* * * * *
52447 ATTCATCTAACCAAATCTCAACCACATTGAATATAAGGATTTGTTTTTACGAGCATCCGAAACAA
774 ATTCATC-AAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACCA
* *
52512 ATTTCGATTTGATTAGAAATTGATTCGGAAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAA
838 ATTTCGATTTAATTAGAAATTGATACGG--AAAAAAATGGAAAAACGATATTAGAAGCATGAAAA
* * *
52577 GCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGT
901 GCCCTTCAATCATTTTGGCATTGAATTACATA-ATTTTTATGAGTATTTTAGCCAAAAATTGAG-
*
52642 TT
964 TC
* *
52644 GGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACG
1 GGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACGGTTTTTGGCTAAAAACG
* * *
52709 AGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTGATTGACATATCTATTT
66 CGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATAT
* * * * * *
52774 TCAACTAAACAAATCTCAACTACATTGGATTTAATGATTTGTTTTTACGAGCATCTGAAACCAAT
131 TCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAAT
*
52839 TTCGATTTAATTAGAAATTGATTCGG-AAAAAATGGAAAAACGATATTAGAAGCTTGAAAAGCCC
196 TTCGATTTAATTAGAAATTGATTCGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCC
* * * * *
52903 TTTAATTATTTTGGCATTTAATTACATATTTTTTTATGTGTATTTTAGATAGAAATTGAGTTTGG
261 TTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTTTGG
* *
52968 TCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACT-A-CATCACTGTTTTTGGCTAAAAATGCG
326 TCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCG
* * * * *
53031 TTCCGAGGCCCCGACTTAGTTTTGGCTGATTTTTGTCCCCAAGACTCATTGACATATCTATATTC
391 TTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATATTC
* *
53096 ATCTAAACAAATCTCAACCATACTGGATTTGAA-GATTTGTTTTTACGA--A--T-----AAATT
456 ATCTAAACAAATCTCAACCACATTGGATTT-AAGGATTTGTTTTTACGAGCATCTGAAACAAATT
*
53151 TCGATTTAATTAGAAATTGATTCGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCT
520 TCGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCT
*
53216 TCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTTTGGT
585 TCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG-TCGGT
53281 CAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGTGT
649 CAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGTGT
* * *
53346 TTAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATTTTCA
714 TCAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCTATATTCA
* *
53411 TCTAAACAAATCTCAACTACATTGGATTTAATGATTTGTTTTTACGAGCATCTGAAACCAATTTC
779 TC-AAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACCAATTTC
*
53476 GATTTAATTAGAAATTGATACGGAAAAAAATGG-AAAACGATATTAGAAGCATGAAAAGCCCTAC
843 GATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCTTC
* * *
53540 AATCATTTTGGCATTGAGTTACATATTTTTTTATGAGTATTTTAGCCAGAAATTGAGTC
908 AATCATTTTGGCATTGAATTACATA-ATTTTTATGAGTATTTTAGCCAAAAATTGAGTC
*
53599 GGGTCAGTTTTTGCAAAATTTTAGCCGAAATCG---------CATCACTGTTTTTGGCTAAAAAC
1 -GGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACGGTTTTTGGCTAAAAAC
* * *
53655 GCGTTCCGGGACCCCGACTCAGTTTTGGCTGATTTTTTGCGCCAAGACTCATTGACATATCTATA
65 GCGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATA
* *
53720 TTCATCTAACCAAATCTCAACCACATTGAATATAAGGATTTGTTTTTACGAGCATCCGAAACAAA
130 TTCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAA
* *
53785 TTTCGATTTGATTAGAAATTGATTCGGAAAAAAAAATGGAAAAACGATATTAGAAGCTTGAAAAG
195 TTTCGATTTAATTAGAAATTGATTCGG--AAAAAAATGGAAAAACGATATTAGAAGCATGAAAAG
*
53850 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGTGTATTTTAGCTAGAAATTGAGTT
258 CCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTT
53915 TGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACTGGTTTTTGGCTAAAAA
323 TGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCAC-GGTTTTTGGCTAAAAA
**
53980 CGCGTTCAAGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTAT
387 CGCGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTAT
* *
54045 ATTCATCTAAACAAATCTCAACCATATTGGATTTAAGGATTTGTTTTTACGAGCATCCGAAACAA
452 ATTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACAA
*
54110 ATTTCGATTTAATTAGAAATTGATTCGG-AAAAAATGGAAAAACGATATTAGAAGCATGAAAAGC
517 ATTTCGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGC
*
54174 CCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTTT
582 CCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG-TC
54239 GGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACG
646 GGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACG
* * * *
54304 TGTTTAAGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTC-TTTAACATATCTATT
711 TGTTCAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAA-ATATCTATA
54368 TTCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT-AAATCCA
775 TTCATC-AAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAA-CCA
*
54432 ATTTCGATTTAATTAGAAATTGATACGG-AAAAAATGGAAAAACGATATTAGTAGCATGAAAAGC
838 ATTTCGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGC
* * **
54496 ACTTCAATCATTTTGGCATTGAATTACAT-A-TTTT-T---T-TTAT-G---AGTA-TGAGTC
903 CCTTCAATCATTTTGGCATTGAATTACATAATTTTTATGAGTATTTTAGCCAAAAATTGAGTC
* * * * *
54547 GAGTAAGTTTTTGCAAGATTTTAGCCGAAATCGTATACTAACCATCACTGTTTTTGGTTAAAAAC
1 G-GTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACGGTTTTTGGCTAAAAAC
* **
54612 GCGTTCCGGGGCCCCGACTCAGTTTTGGCTGATTTTTGGCGCCAAGACAAATTGACATATCTATA
65 GCGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATA
54677 TTCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAA
130 TTCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAA
*
54742 TTTCGATTTAATTAAAAATTGATTCGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCC
195 TTTCGATTTAATTAGAAATTGATTCGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCC
54807 CTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTTTG
260 CTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTTTG
*
54872 GTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACAATCACGGTTTTTGGCTAAAAACGC
325 GTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGC
* *
54937 GTTCCGGGGCTCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGATTCATTGACATATCTATATT
390 GTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATATT
* * *
55002 CATCCAAACAAATCTCAACCACATTGGATTTAAGGATTTGATTTTACGAGTATCTGAAACAAATT
455 CATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAATT
* * * *
55067 TCGAGTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTTGAAGCATGAAAATCTCT
520 TCGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCT
* *
55132 TCAATCATTTTGGCATTGAATTACAAATTTTTTTATGAGTATTTTAGCCAGAAATTGAGTCGAGT
585 TCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTCG-GT
* * *
55197 CAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACAGTTTTTGGCTAAAAACGTGT
649 CAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGTGT
* * *
55262 TTAGGGGCCCCGGCTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCCATATTCA
714 TCAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCTATATTCA
* *
55327 TCAAACCAAATCTCAACCACATTGGATTTAAGTATGTGTTTTTACGAGCATCTGAAACCAATTTC
779 TCAAA-CAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACCAATTTC
* * * * *
55392 GATTTAAGTAGAAATTTATTC-GAAAAAAATGGAAAAACGATTTTAGAAGCATGAGAAGCCCTTC
843 GATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCTTC
* * * * **
55456 AATCATGTGGGCATTGAATTACATAATTTTTATTAGTATTTCAGTAAAAAATTGAGTC
908 AATCATTTTGGCATTGAATTACATAATTTTTATGAGTATTTTAGCCAAAAATTGAGTC
* * * *
55514 GGATCCGTTTTTGCAAAATTTTAGCCGAAATTGTATATTAATCATCACGGTTTTTGGCTAAAAAA
1 GG-TCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACGGTTTTTGGCTAAAAAC
* * * * * * *
55579 GCGTTCAGGAGCCCTGGCTCAGTTTTGCCTGATTTTTGGCTCCAAGACTAATTGAAATATCTATA
65 GCGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATA
* *
55644 TTCATCTAACCAAATCTCAACCACAATGAATTTAAGGATTTCTTTTTACGAGCATCTGAAAC-AA
130 TTCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAA
*
55708 -TTCGATTTAATTAAAAATTGATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGC
195 TTTCGATTTAATTAGAAATTGATTCGG-AAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGC
55772 CCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTTT
259 CCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTTT
* **
55837 GGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAAACATCAATGTTTTTGGCTAAAAACG
324 GGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACG
* * * * * *
55902 AGTTACGGGGCCCCGACTTAGTTTTGGCTGATTTTTGGCGCCAATATTCATTGACATATCTATAT
389 CGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATAT
* * * *
55967 TCATCTAAACAAATCCCAACCATATTGGATTTAAGGATTTGTTTTTACGAGCTTCCGAAACAAAT
454 TCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAAT
* * * *
56032 TTCGATTGAATTAGAAATTGATTCGGAAAAAAAGGGAAAAACGATATTAGGAGCATGAAAAGCCC
519 TTCGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCC
* * * *
56097 TTCAATCATTTTGGCATTGAATTACAAATTTTTTTATGAGTATTTCAGCTATAAATTGAGTTTGG
584 TTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAG-TCGG
* *
56162 TCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACTGTTTTTGGCTAAAAACGCG
648 TCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGTG
* * * *
56227 TTCCGGGGCCCCGACTCAGTTTTGGCAGATTTTTGGCGCCAAGACTCATTGATATATCTATATTC
713 TTCAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCTATATTC
* * * **
56292 ATCCAAACAAATCTCAACTACATTGTATTTAAGGATTTGTTTTTACGAGCATCTAAAATAAATTT
778 AT-CAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACCAATTT
* * * * *
56357 CGAGTTAATTAGAAATTGATGC-GAAAAAAATGGAAAAACGATATTTGAAGCATGAAAATCTCTT
842 CGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCTT
*** *
56421 CAATCATTTTGGCATTGAATTACAGCTTTTTTATGAGTATTTTAGCCATAAATTGAGTC
907 CAATCATTTTGGCATTGAATTACATAATTTTTATGAGTATTTTAGCCAAAAATTGAGTC
*
56480 ATGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACGGTTTTTGGCTAAAAAC
1 -GGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACGGTTTTTGGCTAAAAAC
* ** * *
56545 GTGTTTAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAATACTCATTGACATATCTATT
65 GCGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATA
*
56610 TTCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTCTACGAGCATCTGAAACAAA
130 TTCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAA
* *
56675 TTTCGATTTAATGT-GAAATTGATTCGGAAAAAAATGGGAAAACGATATTAGAAGCATGAAAATC
195 TTTCGATTTAAT-TAGAAATTGATTCGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGC
* * *
56739 CCTTCAATAATTTTGGCATTGAATTGCATATTTTTTTATGAGTATTTTAGCTAAAAATTGAGTTT
259 CCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTTT
* * *
56804 TGTCAGTTTTTGCAAAATTTTAGCCGAAATCGCATACTAACCATCACGGTTTTTGGCTAAAAACG
324 GGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACG
* *
56869 CGTTCCGTGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCTATAT
389 CGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATAT
* * *
56934 TCATCTAAACAAATCTCAACCACATTGGATTTAAAGATTTATTTTTACAAGCATCTGAAACAAAT
454 TCATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAAT
* * ** * * * *
56999 TTCAATTTAATTAGAAATTGATACAGAAAAAAATGGAAAATTGATCTTTGAAGCATGAAAAACTC
519 TTCGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCC
* *
57064 TTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCCT-GAAATTCAGCTGG
584 TTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAG-CTAGAAATTGAG-TCG
* * *** *
57128 GTCAATTTTTGCAAAATTTTTGATGAAATCG--TA-T-A-CATCACGGTTTTTTGCTAAAAACGT
647 GTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGT
* * * * * *
57188 GTTCCGAGGCCTCGGCTTAGTTTTGCCTGATTTTTGGCGCCGAGACTCATTGAAATATCTATATT
712 GTTCAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCTATATT
* * * * ***
57253 CATCTAACCAAATCTCAACCACGTTGGATTTAAGGATTTGTTTTGACGAGCA-CTGAATCTTGTT
777 CATC-AAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACCAATT
* * ** * * *
57317 TCGATTTAATTAGAAATTAATACGGAAATAAGGGGAAAGACGACATTAGAAGCGTGAAAAGCCCT
841 TCGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCT
* *** * * * * * *
57382 TCAATCTTTTTGATGTTGAAGTATATAATTTTTATGAGTACTGTGGCCAAAAATTCAGTC
906 TCAATCATTTTGGCATTGAATTACATAATTTTTATGAGTATTTTAGCCAAAAATTGAGTC
* * * * ***
57442 GGTTCAGTTTTTGCAAAATTTTAGCCAAAACCGTTTAC-AATCTATCATGGTTTTTTTTAATAAA
1 GG-TCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATC-ATCACGG--TTTTTGGCT--A
* * * * ** * * * *
57506 AAAACGCGTTTCGGAGCCCCGATTTAGTTTTGATTGATTTTTGGCGCCTAGACTCCTTGAAATGT
60 AAAACGCGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATAT
* * * * * *
57571 GTAAATTCATCTATCCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATTTGAA
125 CTATATTCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAA
* * *
57636 ACCAATTTCGATTTAATTAGAAATTGATAC-GAAAAAAATGGAAAAACAATATTAGAAGCATGAA
190 ACAAATTTCGATTTAATTAGAAATTGATTCGGAAAAAAATGGAAAAACGATATTAGAAGCATGAA
*
57700 AAGCCCTTC-A--A-TTTGGCATTGAATTAAATA-TTTTTTATGAGTATTTTAGCTAGAAATTGA
255 AAGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGA
** * ** *
57760 GTCGGGTTAGTTTTTGCAAAATTTTAGCTGAAATCGTATACTAACCATCACGGTTTTTGTCTAAA
320 GTTTGGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAA
* * * *
57825 ACCGCGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTTCATTAAAATATT
385 AACGCGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGAC-TCATTGACATATC
* * *
57890 TATATTAATCT--ACTAAATCTCAACCACATTGGATTTAAGGATTAGTTTTTACGATCATCTGAA
449 TATATTCATCTAAAC-AAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAA
* * * *
57953 ACCAATTTCGATTTAATTAGAAATTGATACGTAAAAAAATGGGAAAATGATATTAGAAGCATGAA
513 ACAAATTTCGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAA
*
58018 AAGCCCTTCAATCATTTTGGCATTGAATTACATA-TTTTTT-TGAGTATTTTAGCTTGAAATTGA
578 AAGCCCTTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGA
*
58081 GTCGGGCCAG----T------TTTT-G-CAAAA---T-T--T-----T-A--------GGCTAAA
643 GTC-GGTCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAA
* * * * *
58114 AACGCGTTCCGGGGTCCCGGCTCAGTTTTGCCTGATTTTTGGCGCCAAGACTTATTGAAATATCT
707 AACGTGTTCAGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCT
* * * *
58179 ATATTCATCTTACCAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACCAGCATCTGAATC
772 ATATTCATC-AAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAAC
*** * * * * * *
58244 TTGTTTCGATTTAATAAGAAATTAATTTATGAAAAAAAAATGGAAAAAACGATATTAAAAGCGTG
836 CAATTTCGATTTAATTAGAAATTGA--TACG-GAAAAAAATGG-AAAAACGATATTAGAAGCATG
* * * * * ** * * *
58309 AAAAGCCTTTTAATCTTTTTGGCGTTGAATTATAT-ATTTTTATGAGTATCGTGGCAAAAAATTA
897 AAAAGCCCTTCAATCATTTTGGCATTGAATTACATAATTTTTATGAGTATTTTAGCCAAAAATTG
58373 AGTC
962 AGTC
* * * * * * * * *
58377 GGGTCAGATTTCGCAAAATGTTAGCCTAAATCATGTACTAAACACCACGATTTTT
1 -GGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACGGTTTTT
58432 TACTAAAATC
Statistics
Matches: 5222, Mismatches: 472, Indels: 217
0.88 0.08 0.04
Matches are distributed among these distances:
931 117 0.02
932 31 0.01
933 5 0.00
934 3 0.00
935 68 0.01
936 53 0.01
939 1 0.00
940 1 0.00
943 1 0.00
944 1 0.00
946 3 0.00
947 166 0.03
948 39 0.01
949 1 0.00
950 135 0.03
951 99 0.02
952 62 0.01
953 128 0.02
954 172 0.03
955 492 0.09
956 125 0.02
957 189 0.04
958 30 0.01
959 170 0.03
960 401 0.08
961 435 0.08
962 611 0.12
963 4 0.00
964 8 0.00
965 69 0.01
966 985 0.19
967 591 0.11
968 25 0.00
969 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (965 bp):
GGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAATCATCACGGTTTTTGGCTAAAAACG
CGTTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATAT
TCATCTAACCAAATCTCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAAT
TTCGATTTAATTAGAAATTGATTCGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCC
TTCAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTTTGG
TCAGTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCG
TTCCGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGACATATCTATATTC
ATCTAAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACAAATTT
CGATTTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCTT
CAATCATTTTGGCATTGAATTACATATTTTTTTATGAGTATTTTAGCTAGAAATTGAGTCGGTCA
GTTTTTGCAAAATTTTAGCCAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGTGTTC
AGGGGCCCCGACTCAGTTTTGCCTGATTTTTGGCGCCAAGACTCATTGAAATATCTATATTCATC
AAACAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAACCAATTTCGAT
TTAATTAGAAATTGATACGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCTTCAAT
CATTTTGGCATTGAATTACATAATTTTTATGAGTATTTTAGCCAAAAATTGAGTC
Found at i:59753 original size:25 final size:26
Alignment explanation
Indices: 59706--59758 Score: 99
Period size: 25 Copynumber: 2.1 Consensus size: 26
59696 TCCAAAAAAG
59706 ATGACTGCTTACAAAAAAATTATAAT
1 ATGACTGCTTACAAAAAAATTATAAT
59732 ATGACTGCTTAC-AAAAAATTATAAT
1 ATGACTGCTTACAAAAAAATTATAAT
59757 AT
1 AT
59759 TTTTGATCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (26 bp):
ATGACTGCTTACAAAAAAATTATAAT
Found at i:66459 original size:63 final size:64
Alignment explanation
Indices: 66347--66478 Score: 187
Period size: 64 Copynumber: 2.1 Consensus size: 64
66337 CGACTTCGAG
* * *
66347 AATGAAAAATATTAGGGTTGTATGGTTCAAAAAGAAGTAGATA-TTTTTTTTCTTTTGGGCCCA
1 AATGAAAAATATTAGGGTTGTATGGCTCAAAAAGAAGTAGATAGCTTTTTTTCTTTTGGACCCA
* * *
66410 AATGAAAAATATTGGGGTTTTATGGCTCAAAACGAAAGTAGAT-GCTTTTTTTCTTTTGGACCCA
1 AATGAAAAATATTAGGGTTGTATGGCTCAAAAAG-AAGTAGATAGCTTTTTTTCTTTTGGACCCA
66474 AATGA
1 AATGA
66479 GGTGGGACGC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
63 30 0.49
64 31 0.51
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.36
Consensus pattern (64 bp):
AATGAAAAATATTAGGGTTGTATGGCTCAAAAAGAAGTAGATAGCTTTTTTTCTTTTGGACCCA
Found at i:66547 original size:19 final size:20
Alignment explanation
Indices: 66523--66562 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
66513 AAATGAGAAA
66523 ATTTTCT-GTTACCTTTTAC
1 ATTTTCTCGTTACCTTTTAC
* *
66542 ATTTTCTCGTTTCTTTTTAC
1 ATTTTCTCGTTACCTTTTAC
66562 A
1 A
66563 CTAATCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.15, C:0.20, G:0.05, T:0.60
Consensus pattern (20 bp):
ATTTTCTCGTTACCTTTTAC
Found at i:73262 original size:58 final size:58
Alignment explanation
Indices: 73192--73306 Score: 203
Period size: 58 Copynumber: 2.0 Consensus size: 58
73182 GATGGCCGGC
* * *
73192 TATTTCACTTATTAGGTGAAATGGCCTGGCATCACCCGGTAATGTGATACCATCCGTG
1 TATTTCACTTATTAAGTGAAATGGCCTGGCATCACCCGATAATATGATACCATCCGTG
73250 TATTTCACTTATTAAGTGAAATGGCCTGGCATCACCCGATAATATGATACCATCCGT
1 TATTTCACTTATTAAGTGAAATGGCCTGGCATCACCCGATAATATGATACCATCCGT
73307 CATCGTGGGT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (58 bp):
TATTTCACTTATTAAGTGAAATGGCCTGGCATCACCCGATAATATGATACCATCCGTG
Found at i:75919 original size:37 final size:37
Alignment explanation
Indices: 75867--75940 Score: 114
Period size: 40 Copynumber: 1.9 Consensus size: 37
75857 ATTTGCCAGA
75867 CTTTGTTAATATGG-TATGACATTTGTTGCATGAAAG
1 CTTTGTTAATATGGATATGACATTTGTTGCATGAAAG
75903 CTTTGTTAAATATGGTACTATGACATTTGTTGCATGAA
1 CTTTGTT-AATATGG-A-TATGACATTTGTTGCATGAA
75941 GCTAGCGGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
36 7 0.21
37 7 0.21
40 20 0.59
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.42
Consensus pattern (37 bp):
CTTTGTTAATATGGATATGACATTTGTTGCATGAAAG
Found at i:79715 original size:53 final size:53
Alignment explanation
Indices: 79635--79740 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
79625 ATGCATGTAG
*
79635 ATACTGAGCGATAGCAATTAAATGGAAAAATTAAAAAGATTGTGTGTATGTGT
1 ATACTGAGCAATAGCAATTAAATGGAAAAATTAAAAAGATTGTGTGTATGTGT
*
79688 ATACTGAGCAATAGCAATTAAATGGAAAGATTAAAAAGATTGTGTGTATGTGT
1 ATACTGAGCAATAGCAATTAAATGGAAAAATTAAAAAGATTGTGTGTATGTGT
79741 TATGTGTATA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.30
Consensus pattern (53 bp):
ATACTGAGCAATAGCAATTAAATGGAAAAATTAAAAAGATTGTGTGTATGTGT
Found at i:95147 original size:22 final size:23
Alignment explanation
Indices: 95118--95168 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
95108 CATCATCATC
95118 TGTT-TTAGGCACACATTTTTTT
1 TGTTCTTAGGCACACATTTTTTT
95140 T-TTCTTAGGCACACATTTTTTT
1 TGTTCTTAGGCACACATTTTTTT
95162 TGTTCTT
1 TGTTCTT
95169 TTTTATCTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 2 0.07
22 20 0.74
23 5 0.19
ACGTcount: A:0.16, C:0.16, G:0.12, T:0.57
Consensus pattern (23 bp):
TGTTCTTAGGCACACATTTTTTT
Found at i:98478 original size:19 final size:19
Alignment explanation
Indices: 98454--98503 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
98444 AATGAGTGAA
*
98454 ACAATCAATTTGCCTTTCC
1 ACAATCAATTTGCATTTCC
98473 ACAATC--TTTGAGCATTTCC
1 ACAATCAATTT--GCATTTCC
98492 ACAATCAATTTG
1 ACAATCAATTTG
98504 TCATATCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 3 0.12
19 20 0.77
21 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (19 bp):
ACAATCAATTTGCATTTCC
Found at i:104157 original size:6 final size:6
Alignment explanation
Indices: 104146--104180 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
104136 CATCTCTCGA
104146 CCTCTT CCTCTT CCTCTT CCTCTT CCTCTT CCTCT
1 CCTCTT CCTCTT CCTCTT CCTCTT CCTCTT CCTCT
104181 ATCGCCACTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (6 bp):
CCTCTT
Found at i:105580 original size:14 final size:13
Alignment explanation
Indices: 105561--105590 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
105551 TTCGCCTGTA
105561 ATTCAAATTCATAT
1 ATTCAAATTCA-AT
105575 ATTCAAATTCAAT
1 ATTCAAATTCAAT
105588 ATT
1 ATT
105591 ATTTCTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (13 bp):
ATTCAAATTCAAT
Found at i:121476 original size:4 final size:4
Alignment explanation
Indices: 121467--121491 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
121457 GTGTCCTCAA
121467 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
121492 TCACTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Done.