Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014933.1 Corchorus olitorius cultivar O-4 contig14966, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96029

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3088--3117
3
10.0
3
100
0
60
33
33
0
33
1.58
22990--23017
2
14.0
2
100
0
56
50
0
0
50
1.00
23209--23238
2
15.0
2
92
0
51
50
3
0
46
1.18
26918--27080
82
2.0
82
93
0
281
41
20
19
19
1.91
28455--28480
9
2.9
9
100
0
52
34
46
11
7
1.69
32276--32360
44
1.9
44
100
0
170
42
11
17
28
1.84
32684--32718
18
1.9
18
88
0
52
40
17
25
17
1.90
41155--41204
20
2.5
19
81
15
57
64
8
8
20
1.46
62245--62295
15
3.3
15
70
20
50
33
7
21
37
1.82
63896--63927
16
2.0
16
100
0
64
37
6
12
43
1.68
64890--64940
17
3.1
16
80
8
57
21
19
21
37
1.95
66948--67051
53
2.0
53
100
0
208
40
5
11
42
1.65
72656--72687
16
2.0
16
93
0
55
37
31
15
15
1.89
74433--74513
31
2.6
31
80
7
94
43
13
20
22
1.87
74492--74555
31
2.0
34
87
9
98
31
10
20
37
1.87
74501--74568
31
2.2
31
84
7
84
33
10
22
33
1.88
76342--76392
19
2.5
20
84
6
59
33
17
13
35
1.89
89748--89805
19
2.9
20
84
5
73
36
12
24
27
1.91
90400--90453
30
1.9
28
85
14
76
61
29
5
3
1.36
92822--92908
45
1.9
45
83
0
111
25
27
16
31
1.96
93442--93588
71
2.0
72
92
2
242
7
31
23
36
1.83
93513--93622
51
2.2
51
93
0
184
8
32
25
33
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94379--96028
333
5.0
325
77
8
1548
33
14
16
34
1.90
94379--96028
656
2.5
654
93
2
2760
33
14
16
34
1.90

Tables:   1

The End!