Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014934.1 Corchorus olitorius cultivar O-4 contig14967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156235

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5575--5643
34
2.0
34
97
0
129
31
17
30
20
1.95
10914--10958
2
22.5
2
95
0
81
0
48
0
51
1.00
11837--11916
38
2.1
39
95
4
144
50
2
21
26
1.61
15402--15437
17
2.2
17
90
5
56
27
5
36
30
1.80
15453--15501
17
2.9
17
79
11
55
24
22
18
34
1.96
15460--15510
17
3.1
16
83
8
57
23
21
19
35
1.96
16121--16265
53
2.8
50
80
6
175
33
10
14
42
1.80
16921--16973
26
2.0
26
100
0
106
30
18
15
35
1.92
21998--22078
33
2.5
33
97
0
153
23
18
24
33
1.97
23927--23994
33
2.1
33
97
0
127
22
11
10
55
1.65
24649--24682
17
1.9
18
88
5
52
52
5
20
20
1.67
28066--28091
8
3.2
8
100
0
52
42
34
23
0
1.54
39084--39253
85
2.0
85
89
2
261
30
22
18
28
1.97
43714--43772
30
2.0
30
96
0
109
16
15
5
62
1.49
46028--46065
18
2.1
19
90
5
60
23
18
47
10
1.79
50068--50234
87
1.9
87
93
2
291
27
26
20
24
1.99
71568--71625
19
2.9
19
78
9
62
37
10
18
32
1.85
84711--84741
13
2.4
13
94
0
53
38
9
0
51
1.35
100219--100244
13
2.0
13
100
0
52
23
15
7
53
1.67
119224--119248
7
3.6
7
100
0
50
36
16
16
32
1.90
135487--135740
125
2.0
126
95
0
456
30
20
20
29
1.97

Tables:   1

The End!