Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014938.1 Corchorus olitorius cultivar O-4 contig14971, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132544

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17105--17144
3
13.0
3
94
5
71
35
0
0
65
0.93
35492--35527
18
2.0
18
88
0
54
55
33
8
2
1.44
43156--43349
57
3.4
57
94
0
316
23
9
42
24
1.84
50785--50810
12
2.2
12
100
0
52
7
15
26
50
1.71
50783--50834
18
3.0
16
72
20
50
11
15
23
50
1.76
50800--50854
24
2.3
24
96
0
101
14
16
16
52
1.75
51347--51381
17
1.9
19
88
11
56
62
0
2
34
1.10
52025--52183
78
2.0
78
93
0
273
50
0
14
34
1.48
69071--69135
33
2.0
33
93
0
112
41
16
3
38
1.64
86420--86475
3
18.7
3
100
0
112
66
0
0
33
0.92
91083--91114
15
2.2
15
94
5
57
25
15
0
59
1.36
92514--92538
10
2.5
10
100
0
50
72
0
28
0
0.86
113004--113079
37
2.1
37
89
0
116
46
17
10
26
1.80
113570--113606
9
4.3
9
83
13
51
0
13
0
86
0.57
113568--113606
16
2.5
16
91
4
62
0
12
0
87
0.55
119210--119242
14
2.4
14
90
10
50
30
6
18
45
1.73
123891--123927
17
2.2
17
95
0
65
10
16
16
56
1.66
129364--129513
33
4.4
33
93
3
237
17
16
26
40
1.90
129556--130069
26
19.8
26
90
0
715
28
14
23
33
1.94
132001--132282
62
4.5
62
97
0
519
35
21
39
3
1.71
132254--132343
34
2.6
34
94
0
162
47
17
30
4
1.67
132445--132544
2
50.0
2
100
0
200
50
0
50
0
1.00

Tables:   1

The End!