Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014939.1 Corchorus olitorius cultivar O-4 contig14972, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174122

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
748--893
45
3.2
45
98
0
274
30
21
23
24
1.99
5351--5396
23
2.0
23
83
4
58
58
10
0
30
1.32
7785--7809
2
12.5
2
100
0
50
48
0
52
0
1.00
18594--18632
14
2.8
14
100
0
78
20
0
28
51
1.48
56424--56575
75
2.0
76
97
2
290
57
5
17
20
1.59
68678--68749
36
2.0
36
100
0
144
36
25
22
16
1.94
69347--70335
255
3.9
250
94
1
1602
35
16
24
23
1.95
70939--70981
3
13.7
3
81
18
52
60
2
2
34
1.22
70939--70982
16
2.5
18
82
10
56
59
2
2
36
1.23
70939--70981
22
2.1
21
87
12
63
60
2
2
34
1.22
72132--72178
21
2.2
21
88
0
67
46
36
12
4
1.62
72126--72175
12
4.2
12
81
0
55
46
36
14
4
1.63
83923--84017
48
1.9
51
87
6
142
37
12
20
29
1.89
84336--84558
112
2.0
113
89
2
342
47
9
17
26
1.77
98918--98961
21
2.1
21
83
8
54
25
15
18
40
1.90
99441--99471
2
15.5
2
100
0
62
48
0
0
51
1.00
105963--106018
27
2.2
25
82
17
71
23
10
10
55
1.65
110176--110242
21
3.2
21
66
16
57
50
13
7
28
1.68
110163--110243
42
1.9
42
94
0
144
46
14
8
29
1.75
110309--110422
56
2.0
56
94
0
201
38
1
24
35
1.66
113036--113139
43
2.4
43
93
0
172
41
8
18
31
1.81
113429--113531
43
2.4
42
88
6
145
39
11
16
32
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113690--113795
43
2.5
43
84
3
124
43
9
16
31
1.79
114103--114141
2
20.0
2
94
5
71
48
0
0
51
1.00
128270--128295
12
2.2
12
100
0
52
38
15
15
30
1.88
140176--140203
11
2.5
11
100
0
56
82
0
17
0
0.68
140393--140443
8
6.4
8
100
0
102
25
0
27
47
1.53
144815--144874
10
5.8
10
73
21
52
0
36
0
63
0.95
144815--144874
23
3.0
20
77
17
70
0
36
0
63
0.95
146750--146782
16
2.1
17
88
11
52
24
0
12
63
1.28
149472--149656
92
2.0
92
96
0
343
24
30
15
29
1.95
154441--154490
4
12.5
4
100
0
100
74
0
26
0
0.83
155903--155950
24
2.0
24
88
8
71
50
8
14
27
1.71
172755--173316
284
2.0
284
88
0
838
34
19
14
31
1.92
173304--173331
14
2.0
14
100
0
56
21
28
7
42
1.79
173035--173984
328
2.8
332
91
2
1478
34
18
14
32
1.91

Tables:   1

The End!