Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014940.1 Corchorus olitorius cultivar O-4 contig14973, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132910

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2881
331
8.7
328
86
5
2803
35
15
15
33
1.89
33--2881
668
4.3
661
84
5
2890
35
14
15
33
1.88
3004--3207
96
2.1
96
85
3
268
32
19
9
38
1.83
3774--3951
60
3.0
59
93
2
304
34
26
32
7
1.84
4035--4970
333
2.8
326
83
6
1143
35
17
13
33
1.89
4973--8565
331
10.9
330
84
6
3982
35
16
14
33
1.89
4971--8565
664
5.5
660
84
6
4240
35
16
14
33
1.89
37865--37902
12
3.1
12
85
14
51
31
0
10
57
1.32
37907--37955
24
2.0
24
96
0
89
51
4
18
26
1.64
40935--41204
104
2.7
101
80
13
317
40
10
7
42
1.65
50269--50337
33
2.1
33
91
2
113
23
27
10
39
1.87
71766--71975
102
2.0
103
97
0
395
45
11
14
28
1.79
76438--76479
21
2.0
21
85
0
57
80
4
4
9
0.99
76652--76685
2
17.0
2
93
0
59
52
0
47
0
1.00
77703--77828
60
2.2
56
81
8
148
28
11
18
41
1.86
77727--77845
60
2.0
60
85
3
159
30
12
16
40
1.86
104811--104842
14
2.1
16
88
11
50
0
28
6
65
1.16
111687--111757
29
2.4
29
81
6
81
47
21
14
16
1.81
128815--128948
65
2.1
65
94
1
234
41
15
17
24
1.89
131926--131976
25
2.0
26
85
11
70
64
1
27
5
1.27
131918--131976
19
3.0
20
75
18
61
62
1
27
8
1.33

Tables:   1

The End!