Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014941.1 Corchorus olitorius cultivar O-4 contig14974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116464

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8025--8055
14
2.2
14
94
0
53
41
22
0
35
1.54
9340--9388
21
2.5
19
80
6
53
32
16
10
40
1.82
10386--10443
18
2.9
19
80
16
64
32
3
3
60
1.30
16603--16642
19
2.1
19
95
0
71
40
12
25
22
1.89
21602--21638
18
2.1
18
94
0
65
40
8
16
35
1.78
23813--23872
28
2.1
30
84
6
79
71
1
23
3
1.10
23815--23879
19
3.4
18
72
16
51
73
1
20
4
1.08
25502--25548
3
15.7
3
86
0
58
42
34
23
0
1.54
28100--28265
24
6.5
25
84
9
160
42
35
22
0
1.54
28147--28271
3
41.7
3
90
6
155
39
35
25
0
1.56
45677--45753
40
1.9
39
92
2
127
29
11
15
42
1.82
45733--45771
18
2.2
18
100
0
78
28
10
0
61
1.28
85654--85685
17
1.9
16
93
6
55
9
18
18
53
1.71
97768--97792
2
12.5
2
100
0
50
52
0
0
48
1.00
98775--98842
29
2.3
29
90
5
102
51
22
10
16
1.74
100438--100496
24
2.5
24
82
0
73
16
18
11
52
1.74
115947--116316
41
9.2
40
86
4
426
35
7
25
31
1.84
115945--116292
20
17.3
20
64
10
156
35
8
25
30
1.85
115947--116316
121
3.1
120
87
5
514
35
7
25
31
1.84

Tables:   1

The End!