Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014943.1 Corchorus olitorius cultivar O-4 contig14976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49407

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33--2132
333
6.4
331
82
5
2387
32
14
17
35
1.90
33--2132
668
3.2
657
83
5
2492
32
14
17
35
1.90
2124--2167
19
2.4
19
88
3
72
31
9
6
52
1.59
10398--10467
36
1.9
36
91
0
113
21
10
8
60
1.55
10983--11391
202
2.0
202
96
0
748
44
8
10
36
1.69
11460--11506
25
1.9
24
95
4
85
55
8
6
29
1.55
11497--11577
39
2.0
40
92
2
137
37
3
8
50
1.51
44901--44971
35
2.0
35
82
15
85
15
15
28
40
1.88
45065--45099
18
1.9
18
94
0
61
51
11
8
28
1.67
45302--45376
35
2.1
35
92
0
123
42
17
16
24
1.88
45476--45521
24
2.0
23
82
4
56
23
28
21
26
1.99

Tables:   1

The End!