Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014945.1 Corchorus olitorius cultivar O-4 contig14978, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73096

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
262--295
5
6.6
5
86
6
50
82
2
14
0
0.79
265--296
16
1.9
17
93
6
57
81
3
15
0
0.82
5230--5308
39
2.0
39
100
0
158
36
15
5
43
1.69
12281--12310
6
5.0
6
100
0
60
50
33
0
16
1.46
12580--12631
26
2.0
26
100
0
104
30
7
34
26
1.85
18986--19022
19
1.9
19
88
0
56
40
8
13
37
1.74
20637--20685
19
2.6
21
75
18
54
6
34
4
55
1.44
22519--22671
15
9.8
15
67
13
69
58
9
32
0
1.34
22533--22671
30
4.4
32
78
10
128
58
8
31
0
1.33
22533--22610
18
4.4
18
71
11
63
60
8
30
0
1.28
22533--22673
33
4.4
32
77
11
110
58
8
31
0
1.33
27433--27457
12
2.1
12
100
0
50
84
8
0
8
0.79
31672--31711
2
20.0
2
84
0
53
57
0
0
42
0.98
37415--37447
17
1.9
17
93
0
57
60
0
15
24
1.35
43927--43993
29
2.2
31
84
5
84
34
10
17
37
1.85
44769--44827
29
2.0
31
86
6
86
42
1
0
55
1.09
45952--46013
2
35.5
2
71
26
52
45
0
0
54
0.99
45952--46018
17
3.9
17
84
13
84
44
0
0
55
0.99
45945--46018
26
2.7
29
78
18
86
45
0
0
54
1.00
45947--46013
20
3.1
22
83
16
79
46
0
0
53
1.00
61598--61682
30
2.7
31
78
8
84
28
23
29
18
1.98
66318--66365
19
2.4
20
80
13
55
39
6
6
47
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67498--67561
27
2.3
28
78
10
69
42
7
3
46
1.48
67517--67634
51
2.3
52
70
12
118
46
6
4
42
1.49
68412--68662
22
11.4
22
72
12
158
40
8
14
36
1.77
68475--68666
65
2.9
66
77
7
178
41
8
14
35
1.77

Tables:   1

The End!