genome.fa.s14950.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014950.1 Corchorus olitorius cultivar O-4 contig14983, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57185

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2158--2227	32	2.3	29	87	7	95	31	10	4	54	1.53
2652--2689	15	2.4	16	95	4	69	68	13	5	13	1.37
4366--4421	25	2.1	27	84	12	73	71	1	19	7	1.18
5808--6300	54	9.2	54	82	4	446	27	16	20	35	1.94
5808--6640	108	7.7	108	76	9	491	27	16	21	33	1.95
5808--6261	215	2.1	216	79	7	489	27	15	20	35	1.94
6180--7095	54	17.0	53	82	4	821	28	18	21	32	1.97
6180--7067	162	5.5	159	81	5	952	28	17	21	31	1.97
6180--7095	108	8.5	107	79	6	910	28	18	21	32	1.97
8895--8947	27	1.9	28	88	3	81	18	16	16	47	1.83
8897--8965	27	2.6	27	80	0	75	15	17	20	46	1.84
11338--11495	29	5.5	29	76	12	137	18	17	25	38	1.92
17226--17300	28	2.7	28	87	2	98	18	13	25	42	1.87
21635--21766	32	4.1	32	90	0	201	46	9	17	26	1.77
21635--21809	64	2.8	64	82	6	187	46	8	18	26	1.77
21782--22029	42	5.9	42	82	7	249	52	5	22	20	1.66
21787--22029	83	2.9	83	85	4	294	51	5	23	20	1.67
22024--22140	32	3.7	32	80	6	139	48	5	17	28	1.70
22145--22249	32	3.5	31	78	20	134	49	10	17	22	1.77
22170--22303	26	5.0	25	77	20	128	53	5	20	20	1.64
22141--22275	57	2.4	57	96	2	245	51	8	17	22	1.73
24925--24974	14	3.8	13	84	10	66	44	8	12	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24916--24980	26	2.4	26	80	14	71	43	6	13	36	1.70
29732--29761	15	2.1	15	93	6	53	63	6	16	13	1.50
33298--33399	53	1.9	53	86	9	145	35	13	9	41	1.78
33421--33510	30	2.8	32	77	11	87	37	18	6	36	1.78
33431--33502	34	2.2	32	82	7	90	33	18	5	43	1.73
33462--33627	86	1.9	88	86	7	241	48	18	7	25	1.74
33460--33646	86	2.2	86	81	6	227	44	17	6	31	1.75
33709--33780	29	2.5	30	93	6	130	33	36	13	16	1.89
33953--33994	15	2.7	15	96	3	75	66	14	7	11	1.43
36849--36992	50	2.9	50	85	3	193	33	11	29	26	1.91
40462--40494	16	2.1	16	94	0	57	39	12	9	39	1.74
41871--41896	13	2.0	13	100	0	52	15	30	0	53	1.42
43910--43937	2	14.0	2	100	0	56	50	0	0	50	1.00
44342--44448	27	3.8	27	85	6	124	36	29	15	17	1.92
46867--46924	27	2.1	27	87	0	80	18	13	18	48	1.81
52080--52221	32	4.3	32	86	2	194	47	8	19	25	1.77
52078--52254	32	5.4	32	82	4	142	48	7	19	25	1.74
52082--52264	64	2.8	64	81	6	165	47	8	19	25	1.76
52239--52440	42	4.9	40	86	6	269	51	3	22	21	1.64
52242--52440	83	2.4	83	95	0	353	51	4	23	21	1.65
52242--52505	83	3.2	82	87	2	260	50	4	21	23	1.66
57099--57147	21	2.3	21	82	6	55	38	16	30	14	1.88

Tables:   1

The End!