Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014963.1 Corchorus olitorius cultivar O-4 contig14996, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28543

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3848--3901
21
2.6
21
82
5
56
18
27
29
24
1.98
5024--5072
3
16.3
3
100
0
98
32
0
0
67
0.91
9956--10004
21
2.3
21
82
6
55
14
28
16
40
1.87
13821--13873
27
2.0
27
81
7
63
26
26
16
30
1.97
16367--16408
2
21.5
2
95
4
77
50
0
0
50
1.00
20576--20637
32
1.9
32
87
6
90
29
4
37
29
1.78
21612--21829
111
2.0
111
92
0
364
27
27
13
30
1.94
23916--23996
22
3.8
20
82
11
90
38
11
11
39
1.76
23916--24033
43
2.7
44
81
5
123
38
13
11
36
1.80
23916--24033
22
5.4
22
71
9
62
38
13
11
36
1.80
26203--26246
16
2.9
15
86
6
61
27
18
25
29
1.98
26239--26268
15
2.0
15
100
0
60
13
13
33
40
1.83
26435--26501
27
2.5
27
97
0
125
23
35
22
17
1.95
27000--27118
23
5.2
23
66
22
79
29
23
10
36
1.89
27000--27222
46
4.8
46
95
0
374
30
26
9
34
1.88
27045--27212
23
7.3
23
65
22
93
30
25
9
35
1.88

Tables:   1

The End!