Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014967.1 Corchorus olitorius cultivar O-4 contig15000, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21621

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4288--4313
9
2.9
9
100
0
52
0
0
19
80
0.71
7890--7948
22
2.8
21
74
7
57
66
6
20
6
1.39
8029--8069
13
3.1
13
89
3
55
36
7
12
43
1.70
8694--8730
17
2.2
17
90
4
58
83
0
13
2
0.74
9614--9908
104
2.8
104
80
8
312
20
20
19
40
1.92
9616--9907
139
2.1
140
81
8
335
19
20
19
40
1.92
9610--9905
35
8.4
35
79
7
305
20
19
19
40
1.91
10059--10305
69
3.6
69
94
0
431
27
27
16
28
1.97
10726--11383
30
22.0
30
93
1
1070
20
14
19
45
1.85

Tables:   1

The End!