genome.fa.s14968.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014968.1 Corchorus olitorius cultivar O-4 contig15001, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34798

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3785--3891	33	3.2	33	91	0	169	28	13	19	38	1.89
5072--5360	34	8.3	35	86	5	374	37	17	14	30	1.90
7193--7234	21	2.0	22	90	4	68	23	28	11	35	1.91
9290--9327	17	2.2	17	100	0	76	84	0	10	5	0.77
10402--10551	51	3.0	51	80	3	164	30	18	14	36	1.91
11445--11628	69	2.7	69	90	0	296	28	28	15	27	1.96
11518--11853	118	3.0	113	78	8	357	27	27	16	27	1.97
11758--11981	69	3.2	68	89	2	322	25	29	17	27	1.97
18415--18623	46	4.6	45	83	8	194	35	22	13	28	1.92
18418--18717	92	3.2	91	77	13	243	34	22	14	28	1.94
18682--18938	90	2.8	90	89	0	397	32	24	15	27	1.96
18947--19185	54	4.5	54	75	6	186	38	23	12	26	1.90
19208--19238	16	1.9	16	93	0	53	35	6	29	29	1.82
19224--19278	24	2.3	24	90	0	83	41	5	18	34	1.73
19242--19287	16	2.9	16	76	0	56	47	4	17	30	1.67
19238--19286	24	2.0	24	84	0	62	48	6	14	30	1.67
19283--19331	22	2.2	22	88	0	71	46	4	24	24	1.69
19391--19826	35	12.8	35	78	10	388	40	17	20	21	1.91
19363--19757	96	3.9	97	81	8	391	40	17	20	21	1.92
19485--19842	70	5.1	70	84	5	442	42	17	19	20	1.90
19485--19839	104	3.4	104	85	5	459	41	17	19	21	1.90
20192--20520	43	7.8	43	84	5	429	41	26	11	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20192--20520	84	3.9	84	93	1	561	41	26	11	20	1.85
27873--27949	23	3.5	23	66	28	67	51	7	23	16	1.70
27863--27948	43	2.0	43	97	0	163	53	8	20	17	1.69
27887--27956	20	3.3	20	67	28	56	55	5	21	17	1.62
28267--28335	26	2.7	26	100	0	138	43	21	14	20	1.87
29679--29717	16	2.4	16	87	8	53	64	12	7	15	1.49

Tables:   1

The End!