Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014969.1 Corchorus olitorius cultivar O-4 contig15002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106099

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5653--5933
84
3.3
85
91
2
440
41
27
9
21
1.84
5653--5940
127
2.3
127
87
4
404
41
26
10
21
1.85
5653--5933
43
6.6
43
86
4
392
41
27
9
21
1.84
9064--9253
96
2.0
96
95
0
344
46
13
11
28
1.77
12505--12559
9
6.2
9
77
8
51
69
0
0
30
0.89
12505--12543
18
2.1
19
90
4
62
64
0
0
35
0.94
30780--30877
30
3.3
30
85
0
142
21
32
19
26
1.97
33944--33971
14
2.0
14
100
0
56
42
35
7
14
1.73
36227--36290
21
3.1
21
93
2
112
28
26
14
31
1.95
41162--41267
31
3.5
31
94
2
196
16
20
33
29
1.95
42485--42510
13
2.0
13
100
0
52
92
0
7
0
0.39
44163--44202
21
1.9
21
84
0
53
30
17
22
30
1.97
44213--44276
21
3.1
21
93
2
112
28
26
14
31
1.95
47017--47103
2
46.0
2
71
15
60
48
1
2
48
1.21
47005--47086
24
3.2
25
70
16
62
47
1
2
48
1.22
47007--47105
30
3.2
30
70
11
83
49
1
2
47
1.19
47023--47102
28
3.0
27
77
10
85
46
1
2
50
1.23
49526--49553
3
9.3
3
100
0
56
32
0
0
67
0.91
50061--50149
44
2.0
44
88
0
133
30
24
20
24
1.99
51576--51664
44
2.0
44
86
0
124
29
22
21
26
1.99
51764--51808
22
2.0
22
95
0
81
35
44
6
13
1.70
52199--52273
3
24.7
3
97
2
141
68
0
32
0
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58969--58994
2
13.0
2
100
0
52
50
0
0
50
1.00
78088--78160
30
2.4
31
83
2
94
30
20
17
31
1.96
80301--80405
52
2.0
52
96
0
192
22
25
24
26
2.00
86422--86463
21
2.0
22
85
4
59
26
23
23
26
2.00
86370--86469
52
1.9
52
91
2
166
21
25
25
29
1.99
91403--91431
1
29.0
1
100
0
58
0
0
0
100
0.00
92259--92301
20
2.1
21
86
4
61
58
18
9
13
1.62
92266--92296
16
1.9
16
100
0
62
58
19
6
16
1.59
94482--94522
6
6.8
6
94
0
73
82
0
14
2
0.76
102004--102162
86
1.9
84
85
6
221
45
5
15
33
1.68
105723--105787
26
2.4
28
82
12
75
69
1
20
9
1.24

Tables:   1

The End!