Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014972.1 Corchorus olitorius cultivar O-4 contig15005, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141220

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3229--3347
27
4.4
27
88
2
175
17
16
26
38
1.91
3229--3347
55
2.2
54
95
1
211
17
16
26
38
1.91
16122--16202
32
2.5
32
89
0
126
22
28
14
34
1.94
18921--19008
45
2.0
44
86
6
126
38
22
5
32
1.78
47356--47383
13
2.2
13
100
0
56
71
0
0
28
0.86
47594--47647
28
2.0
28
85
7
76
29
29
14
25
1.95
48361--48386
7
3.7
7
100
0
52
26
30
26
15
1.96
63849--63880
16
2.0
16
100
0
64
43
12
6
37
1.68
66725--66781
28
2.0
28
86
0
78
64
7
8
19
1.44
79499--79668
84
2.0
84
98
0
331
30
20
18
30
1.97
80437--80469
2
16.5
2
93
0
57
48
3
48
0
1.17
80467--80497
3
10.3
3
100
0
62
67
0
32
0
0.91
81153--81178
2
13.0
2
100
0
52
50
0
50
0
1.00
86524--86830
108
2.8
108
88
3
422
32
14
14
38
1.87
88587--88752
87
1.9
87
97
0
314
25
12
19
41
1.87
88888--88996
53
2.1
53
100
0
218
25
11
24
38
1.88
93336--93368
1
33.0
1
100
0
66
0
0
0
100
0.00
99667--99710
21
2.1
21
100
0
88
29
13
22
34
1.93
101873--101897
13
1.9
13
100
0
50
52
8
0
40
1.31
104209--104471
130
2.0
131
88
2
395
49
1
10
38
1.48
115556--115600
23
2.0
23
81
0
54
20
48
26
4
1.68
116557--116678
16
7.7
16
73
9
115
39
38
16
5
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116557--116677
32
3.8
32
84
1
154
38
38
16
5
1.73
116557--116678
48
2.6
47
79
6
138
39
38
16
5
1.72
117306--117354
26
2.0
25
81
18
59
44
6
4
44
1.47
118871--119145
137
2.0
137
97
0
523
37
15
10
36
1.82
120420--120477
23
2.5
23
94
5
100
43
5
12
39
1.64
132546--132579
17
2.0
17
100
0
68
11
29
17
41
1.85
132694--132727
17
2.0
17
100
0
68
11
29
17
41
1.85
132534--132829
148
2.0
148
99
0
583
29
17
17
35
1.93
132898--133035
71
1.9
71
94
0
240
29
16
18
34
1.93
140161--140189
12
2.4
12
100
0
58
17
24
24
34
1.96
140677--140893
108
2.0
107
95
0
389
39
8
8
44
1.65
140951--141014
17
3.2
21
68
20
64
50
9
3
37
1.51
140939--141019
39
2.0
40
95
2
146
50
7
3
38
1.48

Tables:   1

The End!