Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014973.1 Corchorus olitorius cultivar O-4 contig15006, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 917

Length: 1529
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39


Found at i:568 original size:25 final size:24

Alignment explanation


    Indices: 532--578  Score: 85
    Period size: 25  Copynumber: 1.9  Consensus size: 24

        522 AATACTTACA

                                    
        532 TTAATTAAATTCTTAGGTATTTTT
          1 TTAATTAAATTCTTAGGTATTTTT

                                   
        556 TTAATTCAAATTCTTAGGTATTT
          1 TTAATT-AAATTCTTAGGTATTT

        579 GTGCAAACGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  24    6  0.27
  25   16  0.73

ACGTcount: A:0.30, C:0.06, G:0.09, T:0.55


Consensus pattern (24 bp):   
TTAATTAAATTCTTAGGTATTTTT

Found at i:1478 original size:36 final size:36

Alignment explanation


    Indices: 1424--1493  Score: 113
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       1414 GAGATTTTGG

                         *      *               
       1424 AGAAATATAATAATCAAAATTACAAAAGATGTAATA
          1 AGAAATATAATAACCAAAATCACAAAAGATGTAATA

                    *                         
       1460 AGAAATATGATAACCAAAATCACAAAAGATGTAA
          1 AGAAATATAATAACCAAAATCACAAAAGATGTAA

       1494 GGTTATTGAA


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  36   31  1.00

ACGTcount: A:0.60, C:0.09, G:0.10, T:0.21


Consensus pattern (36 bp):   
AGAAATATAATAACCAAAATCACAAAAGATGTAATA
Done.