genome.fa.s14974.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014974.1 Corchorus olitorius cultivar O-4 contig15007, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  258837

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3810--3875	32	2.1	32	88	2	98	30	16	16	36	1.91
10939--10979	5	8.6	5	84	10	59	60	0	17	21	1.35
12943--12991	25	2.0	25	100	0	98	46	0	12	40	1.41
13567--13642	16	4.7	17	75	8	70	40	36	13	9	1.76
14307--14336	11	2.7	11	100	0	60	40	30	20	10	1.85
14748--14790	11	3.9	11	81	0	50	39	20	11	27	1.88
19613--19655	11	3.9	11	81	0	50	39	20	11	27	1.88
19935--19968	12	2.7	13	86	9	52	17	0	14	67	1.23
25722--25770	13	4.2	13	73	21	54	69	0	0	30	0.89
25716--25794	28	2.8	28	81	11	81	58	2	1	37	1.20
27189--27234	18	2.6	18	78	0	56	45	0	2	52	1.13
28584--28685	51	2.0	50	83	9	127	21	23	13	41	1.89
31283--31405	43	3.0	42	81	18	179	30	24	2	43	1.67
31326--31393	35	1.9	35	100	0	136	27	23	0	48	1.51
33103--33163	32	1.9	32	89	0	95	49	6	18	26	1.71
41272--41402	35	3.7	36	77	13	128	38	18	14	29	1.90
41296--41405	35	3.0	37	79	11	136	38	17	15	29	1.90
41272--41405	72	1.9	72	90	6	218	38	17	14	29	1.90
48678--48746	33	2.1	33	97	0	129	27	17	21	33	1.96
49505--49631	39	3.2	39	89	4	193	48	18	14	19	1.82
52632--52671	11	3.7	11	96	3	73	0	27	60	12	1.33
56328--56388	32	1.9	32	96	0	113	21	26	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56871--56898	14	2.0	14	100	0	56	64	21	0	14	1.29
60288--60578	134	2.2	132	85	4	381	27	18	16	37	1.93
61679--61771	47	2.0	48	89	6	145	22	7	18	51	1.71
61768--61869	31	3.4	29	76	12	82	30	11	23	34	1.91
62093--62140	24	2.0	25	91	4	80	33	25	6	35	1.81
62096--62140	12	3.7	12	87	3	63	35	24	4	35	1.76
65282--65457	75	2.4	74	78	5	167	34	17	17	31	1.93
73954--73991	20	1.9	20	88	0	58	34	13	21	31	1.91
79233--79295	7	8.7	7	79	11	65	3	19	1	76	1.01
79252--79290	20	2.0	20	89	0	60	2	17	0	79	0.84
79942--80020	40	2.0	40	97	0	149	20	21	24	34	1.97
80019--80095	3	25.7	3	100	0	154	32	0	0	67	0.91
81623--81675	26	2.0	26	92	0	88	28	13	32	26	1.93
84074--84136	28	2.2	28	91	0	99	31	14	11	42	1.80
84560--84634	29	2.6	29	89	2	105	42	17	20	20	1.89
88069--88118	25	2.0	25	100	0	100	48	32	4	16	1.64
94186--94280	47	2.0	47	100	0	190	30	14	12	42	1.83
136627--137007	181	2.1	177	81	8	457	37	15	14	33	1.87
140743--140776	9	3.8	9	92	0	50	76	0	23	0	0.79
140751--140788	14	2.5	15	83	8	51	76	0	23	0	0.79
183227--183251	13	1.9	13	100	0	50	48	0	52	0	1.00
185757--185811	23	2.3	25	81	12	62	29	20	1	49	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188422--188463	21	2.0	21	85	0	57	38	26	14	21	1.91
193117--193276	63	2.5	63	97	0	302	41	10	34	13	1.78
193352--193628	84	3.3	84	94	1	475	43	13	24	18	1.86
193465--193596	42	3.1	42	60	23	96	43	13	25	17	1.86
193570--193922	105	3.4	105	95	0	634	46	14	22	16	1.82
193864--193962	42	2.4	42	89	0	126	42	14	28	15	1.85
193884--193964	42	1.9	42	100	0	162	40	16	28	14	1.88
196492--196534	21	2.0	22	86	4	61	53	0	2	44	1.13
207923--207983	33	2.0	31	87	12	90	59	3	24	13	1.49
208854--208908	21	2.7	21	88	8	78	38	3	12	45	1.60
211298--211356	31	1.9	31	82	6	75	11	18	37	32	1.87
214588--214613	11	2.4	11	100	0	52	92	7	0	0	0.39
217204--217228	10	2.5	10	100	0	50	80	8	12	0	0.92
228797--228830	17	2.1	17	88	5	52	52	2	0	44	1.16
240061--240091	16	1.9	16	93	0	53	6	9	3	80	0.99
249999--250070	28	2.7	26	91	8	110	40	6	5	47	1.54
257812--258766	321	3.0	319	85	4	1210	35	18	15	30	1.92

Tables:   1

The End!