Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014975.1 Corchorus olitorius cultivar O-4 contig15008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20973

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58--762
323
2.2
322
80
6
789
35
16
15
33
1.90
74--1529
734
2.0
728
90
3
2282
36
16
14
32
1.89
2268--3521
322
3.8
320
79
9
1301
35
15
14
33
1.89
3541--4829
666
1.9
663
90
3
2000
34
16
15
33
1.90
5129--6595
324
4.5
317
80
7
1516
33
16
15
34
1.90
6665--7735
323
3.3
328
81
7
1327
34
16
15
33
1.91
7905--7965
28
2.1
28
84
9
77
44
1
1
52
1.20
7898--7974
21
3.7
20
75
16
66
45
1
1
51
1.17
8619--9432
322
2.5
324
82
6
948
34
16
15
33
1.90
9894--9952
29
2.1
28
84
9
75
64
5
5
25
1.35
18197--18238
21
2.0
22
95
4
77
28
16
11
42
1.84
20934--20973
2
20.0
2
100
0
80
50
0
0
50
1.00

Tables:   1

The End!