Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014978.1 Corchorus olitorius cultivar O-4 contig15011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100436

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1708--1812
51
2.0
52
94
1
185
36
16
19
28
1.93
11958--12118
33
5.0
33
92
5
251
14
52
28
4
1.62
11945--12138
66
3.1
63
85
9
254
15
49
29
5
1.66
11968--12138
33
5.4
33
90
6
225
15
49
29
5
1.67
12203--12252
25
2.0
25
92
0
82
34
2
22
42
1.65
18764--18847
26
3.4
26
63
17
70
34
13
16
35
1.88
18771--18865
47
2.0
47
100
0
190
38
12
16
31
1.86
19025--19062
19
2.0
19
100
0
76
31
0
10
57
1.32
23920--24037
22
5.3
22
75
5
94
38
16
10
34
1.82
23999--24059
23
2.6
24
87
7
81
39
8
14
37
1.76
24186--24462
22
12.6
22
71
14
103
35
12
7
44
1.72
24337--24462
44
2.9
44
80
9
141
34
9
10
45
1.71
28236--28353
55
2.1
57
90
6
186
50
12
14
22
1.76
28265--28354
30
3.2
29
67
20
73
53
12
13
21
1.72
30402--30431
15
2.0
15
93
0
51
6
10
46
36
1.64
33220--33349
31
4.2
31
87
3
163
18
26
23
31
1.97
33190--33349
62
2.6
62
82
0
185
20
26
23
30
1.98
67558--67592
16
2.2
16
100
0
70
45
5
8
40
1.58
77902--77936
15
2.3
15
90
0
52
25
11
40
22
1.88
80498--80532
11
3.2
11
91
0
61
80
17
2
0
0.84
80901--80951
23
2.3
22
90
9
86
45
0
3
50
1.20
80901--80963
23
2.9
23
82
15
80
44
0
3
52
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87646--87678
2
17.0
2
87
6
50
48
0
3
48
1.17
90159--90211
26
2.0
26
92
7
90
32
22
11
33
1.90
92403--92465
31
2.0
31
96
0
117
42
22
9
25
1.83
96091--96237
31
4.7
31
83
3
161
17
21
25
36
1.94

Tables:   1

The End!