genome.fa.s14981.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014981.1 Corchorus olitorius cultivar O-4 contig15014, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110365

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--100	2	50.0	2	97	0	191	0	49	1	50	1.07
10269--10302	16	2.1	17	88	5	52	35	8	14	41	1.77
11357--11390	2	17.5	2	93	6	61	52	0	0	47	1.00
14338--14620	144	2.0	140	95	2	503	34	13	20	31	1.91
15493--15522	15	1.9	16	93	6	53	43	0	3	53	1.17
15906--19497	340	10.9	315	70	14	881	32	14	15	37	1.88
16885--17561	360	1.9	360	82	4	846	32	15	15	36	1.89
17223--19497	327	6.9	326	74	10	1457	33	13	15	36	1.87
24908--24996	23	4.0	22	84	9	101	37	17	8	35	1.82
25019--25057	20	2.0	20	84	0	51	23	20	7	48	1.75
24908--25261	22	16.9	21	67	18	125	37	16	7	38	1.78
25302--25514	22	9.8	22	69	13	100	33	14	10	41	1.79
25362--25467	44	2.4	44	83	12	139	34	11	9	44	1.73
25551--25712	22	7.4	21	72	11	87	37	18	8	35	1.80
25551--25930	66	5.6	66	72	13	254	37	19	8	35	1.81
25551--25930	44	8.8	42	69	17	196	37	19	8	35	1.81
25752--25860	46	2.4	43	84	6	128	35	18	9	36	1.83
25717--25926	22	9.5	22	77	11	180	37	18	8	35	1.82
27772--27802	16	1.9	16	93	0	53	48	6	0	45	1.28
30930--30999	35	2.0	35	100	0	140	28	20	14	37	1.91
31370--31464	31	3.1	31	81	0	109	33	26	23	16	1.96
32815--32863	24	2.0	24	100	0	98	28	8	32	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34055--34094	18	2.2	18	100	0	80	25	25	10	40	1.86
34526--34604	29	2.7	29	80	7	88	30	20	8	40	1.83
39638--39771	71	1.9	72	87	4	200	44	19	7	29	1.78
55506--55664	38	3.9	38	83	16	219	32	19	15	32	1.93
55556--55653	49	2.0	49	97	0	187	33	20	15	30	1.93
55652--55677	13	2.0	13	100	0	52	23	15	15	46	1.83
57785--57811	2	13.5	2	100	0	54	48	0	0	51	1.00
60914--61121	103	2.0	103	93	0	353	29	4	19	46	1.70
61766--61825	31	1.9	31	86	6	86	21	40	25	13	1.89
63461--63498	20	1.9	20	84	10	51	36	2	21	39	1.67
70609--70642	12	2.8	12	95	4	59	5	5	0	88	0.64
76826--76884	21	2.8	21	86	2	73	38	22	18	20	1.93
83226--83318	40	2.3	40	87	7	127	30	8	18	43	1.80
94981--95039	2	31.5	2	77	19	65	54	3	0	42	1.17
94980--95039	17	3.4	17	81	18	77	55	3	0	41	1.16
94981--95039	19	2.9	21	85	14	72	54	3	0	42	1.17
94980--95047	21	3.2	22	81	8	79	54	4	0	41	1.20
100790--100892	50	2.1	49	94	1	179	28	24	2	44	1.68
101096--101155	3	20.0	3	93	6	104	31	0	1	66	1.01
101190--101246	27	2.1	27	83	3	69	38	1	15	43	1.57
105672--105712	21	2.0	21	100	0	82	43	19	9	26	1.82

Tables:   1

The End!