Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014982.1 Corchorus olitorius cultivar O-4 contig15015, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80369

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9573--9654
42
1.9
42
92
2
137
47
15
6
30
1.70
9719--9830
56
2.0
56
98
1
217
41
1
21
35
1.64
9920--9944
10
2.5
10
100
0
50
80
8
12
0
0.92
20478--20541
31
2.1
31
84
0
83
43
18
17
20
1.88
21792--21860
34
2.1
32
89
7
104
57
0
17
24
1.39
30946--30970
2
12.5
2
100
0
50
0
48
0
52
1.00
31401--31477
29
2.6
30
83
6
102
31
24
11
32
1.91
31401--31521
31
4.0
30
73
13
104
29
22
13
34
1.92
31770--31846
29
2.5
31
83
6
104
29
12
27
29
1.94
32071--32197
64
2.0
64
98
0
245
30
25
6
37
1.81
38218--38254
18
2.1
18
100
0
74
37
5
21
35
1.77
58040--58065
2
13.0
2
100
0
52
50
0
0
50
1.00
58106--58160
29
2.0
28
82
7
67
25
21
9
43
1.82
59315--59409
47
2.0
47
100
0
190
37
16
7
37
1.77
64720--64770
21
2.4
21
81
18
61
58
0
0
41
0.98
64722--64770
25
2.0
25
84
8
64
59
0
0
40
0.98

Tables:   1

The End!