Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014983.1 Corchorus olitorius cultivar O-4 contig15016, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86029

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155--189
18
1.9
18
94
0
61
28
8
11
51
1.67
1517--1578
30
2.1
30
93
0
106
25
25
4
43
1.74
13970--14249
141
2.0
139
92
1
470
22
12
23
41
1.88
14315--14369
17
3.2
17
78
14
60
40
20
20
20
1.92
22274--22312
20
2.0
20
100
0
78
20
23
25
30
1.98
26521--26547
2
13.5
2
100
0
54
51
0
0
48
1.00
28363--28417
17
3.2
17
82
10
67
23
21
18
36
1.95
30293--30343
25
2.1
25
85
10
70
60
0
0
39
0.97
30293--30343
22
2.2
24
83
16
72
60
0
0
39
0.97
33654--33678
13
1.9
13
100
0
50
0
16
0
84
0.63
44447--44554
55
2.0
55
92
3
182
30
18
16
34
1.93
56758--56801
3
14.7
3
100
0
88
34
0
0
65
0.93
69735--69853
59
2.0
59
96
0
220
27
23
11
36
1.90
74037--74083
17
2.8
16
81
9
58
34
21
21
23
1.97
76283--76330
3
16.7
3
91
8
82
64
0
0
35
0.94
84345--84598
122
2.0
123
89
6
384
37
10
2
50
1.50
84584--84622
14
2.9
13
80
3
51
41
2
2
53
1.28
85425--85564
73
1.9
73
89
0
217
34
16
7
42
1.75

Tables:   1

The End!