Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014985.1 Corchorus olitorius cultivar O-4 contig15018, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39816

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
151--260
32
3.3
32
73
20
118
15
8
30
46
1.75
167--270
35
3.3
29
68
24
75
15
7
27
49
1.72
128--268
67
2.1
67
97
0
264
14
7
27
50
1.69
454--480
14
1.9
14
100
0
54
7
25
22
44
1.79
10984--11062
38
2.1
38
97
0
149
27
24
16
31
1.96
13656--13736
41
2.0
41
95
0
144
35
9
12
41
1.76
14182--14679
22
22.5
22
67
10
176
37
11
15
34
1.84
14595--14719
66
1.9
67
81
5
155
33
9
14
42
1.78
14561--14720
44
3.6
45
79
7
141
33
10
13
41
1.79
18385--18430
21
2.2
21
88
0
65
30
15
10
43
1.81
19203--19479
132
2.1
132
97
1
527
36
8
11
42
1.72
19763--19808
24
1.9
24
82
8
58
36
2
4
56
1.31
23647--23688
22
1.9
22
100
0
84
30
4
11
52
1.59
23669--23750
41
2.0
41
92
0
137
25
8
13
52
1.68
29256--29309
1
54.0
1
77
0
54
0
0
11
88
0.50
29252--29309
7
8.1
7
94
5
91
0
0
12
87
0.53
37345--37425
39
2.0
40
92
2
137
37
3
8
50
1.51
38004--38041
13
3.0
13
88
11
53
36
7
5
50
1.54
39730--39776
17
2.7
18
81
12
53
29
23
0
46
1.52

Tables:   1

The End!