Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014992.1 Corchorus olitorius cultivar O-4 contig15025, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8260
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:1339 original size:30 final size:30

Alignment explanation


    Indices: 1300--1359  Score: 86
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1290 CATTTCTTGC

                *                *         
       1300 TCTTGAAATTATTCTTCAAT-GGTCTTCAAA
          1 TCTTCAAATTA-TCTTCAATAAGTCTTCAAA

                                          
       1330 TCTTCAAATTATCTTCAATAAGTCTTCAAA
          1 TCTTCAAATTATCTTCAATAAGTCTTCAAA

       1360 CACGAACTTC


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  29    8  0.30
  30   19  0.70

ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42


Consensus pattern (30 bp):   
TCTTCAAATTATCTTCAATAAGTCTTCAAA

Found at i:2227 original size:17 final size:18

Alignment explanation


    Indices: 2192--2227  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       2182 CTCCTCTATC

                     *        
       2192 ATGAAAACACTTCTTTTT
          1 ATGAAAACAATTCTTTTT

                              
       2210 ATGAAAACAATT-TTTTT
          1 ATGAAAACAATTCTTTTT

             
       2227 A
          1 A

       2228 ATTACCCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    6  0.35
  18   11  0.65

ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44


Consensus pattern (18 bp):   
ATGAAAACAATTCTTTTT
Done.