Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014995.1 Corchorus olitorius cultivar O-4 contig15028, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 937

Length: 1563
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.31


Found at i:1069 original size:29 final size:27

Alignment explanation


    Indices: 1012--1063  Score: 77
    Period size: 27  Copynumber: 1.9  Consensus size: 27

       1002 ATGATTTAGG

                      *                
       1012 GGTTACTAACTCCCTTTTTTCTTTTGA
          1 GGTTACTAACACCCTTTTTTCTTTTGA

                        *       *    
       1039 GGTTACTAACACTCTTTTTTTTTTT
          1 GGTTACTAACACCCTTTTTTCTTTT

       1064 CAGAGGGACA


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  27   22  1.00

ACGTcount: A:0.15, C:0.19, G:0.10, T:0.56


Consensus pattern (27 bp):   
GGTTACTAACACCCTTTTTTCTTTTGA
Done.