Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000015.1 Corchorus olitorius cultivar O-4 contig00015, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 943

Length: 1573
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35


Found at i:1411 original size:16 final size:17

Alignment explanation


    Indices: 1385--1418  Score: 61
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       1375 TTTTGTAAAA

                             
       1385 GAATAATAAAAATACAT
          1 GAATAATAAAAATACAT

                             
       1402 GAAT-ATAAAAATACAT
          1 GAATAATAAAAATACAT

             
       1418 G
          1 G

       1419 TTTACCCTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   13  0.76
  17    4  0.24

ACGTcount: A:0.62, C:0.06, G:0.09, T:0.24


Consensus pattern (17 bp):   
GAATAATAAAAATACAT
Done.